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07/20: gnu: Add r-do-db.
From: |
guix-commits |
Subject: |
07/20: gnu: Add r-do-db. |
Date: |
Wed, 27 Mar 2019 11:17:30 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit f8a5af4653077502a3818b4c71ad7bf1be67389a
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 27 15:43:37 2019 +0100
gnu: Add r-do-db.
* gnu/packages/bioconductor.scm (r-do-db): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3f5e61f..86c15c0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -708,6 +708,32 @@ annotations.")
"This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0)))
+(define-public r-do-db
+ (package
+ (name "r-do-db")
+ (version "2.9")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "DO.db_" version ".tar.gz"))
+ (sha256
+ (base32
+ "10bqqa124l61ivzy4mdd3z3ar9a6537qbxw23pc4y9w8a6dwnavn"))))
+ (properties
+ `((upstream-name . "DO.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://www.bioconductor.org/packages/DO.db/")
+ (synopsis "Annotation maps describing the entire Disease Ontology")
+ (description
+ "This package provides a set of annotation maps describing the entire
+Disease Ontology.")
+ (license license:artistic2.0)))
+
;;; Experiment data
- branch master updated (06013a4 -> f8295ee), guix-commits, 2019/03/27
- 01/20: gnu: Add r-rttf2pt1., guix-commits, 2019/03/27
- 03/20: gnu: Add r-extrafont., guix-commits, 2019/03/27
- 06/20: gnu: Add r-fgsea., guix-commits, 2019/03/27
- 02/20: gnu: Add r-extrafontdb., guix-commits, 2019/03/27
- 05/20: gnu: Add r-msigdbr., guix-commits, 2019/03/27
- 08/20: gnu: Add r-gridgraphics., guix-commits, 2019/03/27
- 04/20: gnu: Add r-xkcd., guix-commits, 2019/03/27
- 11/20: gnu: Add r-triebeard., guix-commits, 2019/03/27
- 10/20: gnu: Add r-ggplotify., guix-commits, 2019/03/27
- 07/20: gnu: Add r-do-db.,
guix-commits <=
- 09/20: gnu: Add r-farver., guix-commits, 2019/03/27
- 12/20: gnu: Add r-tweenr., guix-commits, 2019/03/27
- 19/20: gnu: Add r-enrichplot., guix-commits, 2019/03/27
- 18/20: gnu: Add r-dose., guix-commits, 2019/03/27
- 17/20: gnu: Add r-ggraph., guix-commits, 2019/03/27
- 16/20: gnu: Add r-europepmc., guix-commits, 2019/03/27
- 13/20: gnu: Add r-polyclip., guix-commits, 2019/03/27
- 14/20: gnu: Add r-urltools., guix-commits, 2019/03/27
- 20/20: gnu: Add r-clusterprofiler., guix-commits, 2019/03/27
- 15/20: gnu: Add r-ggforce., guix-commits, 2019/03/27