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01/01: gnu: Add r-hapassoc.
From: |
guix-commits |
Subject: |
01/01: gnu: Add r-hapassoc. |
Date: |
Mon, 25 Mar 2019 11:02:24 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 3080b81af63c201decc96f8ba62ae174cdc574a2
Author: Ricardo Wurmus <address@hidden>
Date: Mon Mar 25 16:02:15 2019 +0100
gnu: Add r-hapassoc.
* gnu/packages/cran.scm (r-hapassoc): New variable.
---
gnu/packages/cran.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fe69ee8..c10af5f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12802,3 +12802,25 @@ following the algorithm of Yang (Evolution, 1998,
52(4):950-956). Functions
are also given to test via randomisations the significance of each F and
variance components, using the likelihood-ratio statistics G.")
(license license:gpl2+)))
+
+(define-public r-hapassoc
+ (package
+ (name "r-hapassoc")
+ (version "1.2-8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "hapassoc" version))
+ (sha256
+ (base32
+ "0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"))))
+ (build-system r-build-system)
+ (home-page "http://stat.sfu.ca/statgen/research/hapassoc.html")
+ (synopsis "Inference of trait associations with SNP haplotypes")
+ (description
+ "Hapassoc performs likelihood inference of trait associations with
+haplotypes and other covariates in @dfn{generalized linear models} (GLMs). The
+functions are developed primarily for data collected in cohort or
+cross-sectional studies. They can accommodate uncertain haplotype phase and
+handle missing genotypes at some SNPs.")
+ (license license:gpl2)))