branch staging updated (e21bd8d -> 350b7f8)

[guix-commits]

mbakke pushed a change to branch staging
in repository guix.

      from  e21bd8d   gnu: vulkan-headers: Update to 1.1.102.
      adds  84b226c   gnu: java-eclipse-jdt-core: Include resources.
      adds  e31f3cd   gnu: Add perl-data-dumper.
      adds  f0736d4   gnu: go-github.com-jtolds-gls: Update to 4.20.
      adds  78cda0b   gnu: font-wqy-zenhei: Use HTTPS home page.
      adds  2d8e1e2   gnu: font-wqy-zenhei: Remove redundant FILE-NAME.
      adds  73c5c48   gnu: font-terminus: Update to 4.47.
      adds  7649878   gnu: font-fira-code: Update to 1.206.
      adds  bba5bb3   gnu: font-anonymous-pro: Use HTTPS home page.
      adds  77593a4   gnu: gegl: Update to 0.4.14.
      adds  8d6813f   gnu: virtualgl: Update to 2.6.1.
      adds  e5f4796   gnu: folks: Don't use NAME in source URI.
      adds  d23495f   gnu: folks: Update to 0.11.4.
      adds  d22d246   gnu: btrfs-progs: Update to 4.20.2.
      adds  9c7226d   gnu: python-language-server: Update to 0.24.0.
      adds  3355e49   gnu: ruby-rack-protection: Update to 2.0.5.
      adds  acb9e3d   gnu: Add ruby-mustermann.
      adds  3bb094e   gnu: Add ruby-sinatra.
      adds  6e87695   gnu: Add ruby-thin.
      adds  be6016d   gnu: Add ruby-skinny.
      adds  df747c8   gnu: Add mailcatcher.
      adds  ac5aad5   gnu: scdoc: Update to 1.9.4.
      adds  1a3db0b   gnu: rust: Update to 1.31.1.
      adds  f347fb7   linux-modules: module-soft-dependencies: Partition the 
result and return it as two lists.
      adds  f5e08f1   gnu: wget2: Update to 1.99.1.
      adds  083639a   gnu: genext2fs: Update to 1.4.1-4.
      adds  e569c77   gnu: libnftnl: Update to 1.1.2.
      adds  9e6008b   gnu: xfsprogs: Update to 4.20.0.
      adds  2d588f3   gnu: f2fs-tools: Don't use NAME in source URI.
      adds  59ac0a2   gnu: f2fs-tools: Update to 1.12.0.
      adds  9eb7cde   gnu: iucode-tool: Update to 2.3.1.
      adds  9a3d176   gnu: thinkfan: Update to 1.0.2.
      adds  908a3f3   gnu: thinkfan: Let the build system handle rcscripts/.
      adds  7e80767   gnu: emacs-disk-usage: Update to 1.3.0.
      adds  f862697   gnu: emacs-no-x-toolkit: Fix configure flags.
      adds  f4319c6   gnu: Syncthing: Update to 1.1.0.
      adds  107b081   gnu: wpa-supplicant: Add 'cpe-name' property.
      adds  fbf26cb   gnu: singularity: Patch 'Makefile.in' in a snippet.
      adds  af85757   gnu: singularity: Leave PATH unchanged.
      adds  5387971   artwork: Update snapshot to b975164.
      adds  5f7c036   gnu: dav1d: Update to 0.2.0.
      adds  cc7058b   gnu: lxc: Update to 3.1.0.
      adds  2e625ef   gnu: lxc: Fix documentation directory.
      adds  2830802   gnu: xinit: Update to 1.4.1.
      adds  84bdd0e   gnu: plantuml: Update to 1.2019.2.
      adds  fe67e51   gnu: youtube-dl: Update to 2019.03.01.
      adds  dbfa3bb   gnu: you-get: Update to 0.4.1256.
      adds  a7afa45   gnu: Add libaom.
      adds  84eb265   gnu: FFmpeg: Build with AV1 support.
      adds  3546e97   gnu: MPD: Update to 0.21.5.
      adds  3113ecf   gnu: glslang: Update to 7.11.3113.
      adds  9a1de5f   gnu: spirv-headers: Update to commit 8bea0a2.
      adds  264c803   gnu: spirv-tools: Update to 2019.1.
      adds  d9eada7   gnu: shaderc: Update to 2018.0.
      adds  e40e379   gnu: java-eclipse-equinox-common: Update to 3.10.200.
      adds  4fa9b6e   gnu: java-eclipse-core-runtime: Update to 3.15.100.
      adds  c8427a5   gnu: java-eclipse-core-resources: Update to 3.13.200.
      adds  43d6776   gnu: java-eclipse-jdt-core: Update to 3.16.0.
      adds  3dad608   gnu: Add r-org-dr-eg-db.
      adds  1fe9a36   gnu: r-dnacopy: Remove duplicate definition.
      adds  4fc9b5b   gnu: Add genrich.
      adds  5531782   gnu: Add guile-studio.
      adds  5bb674a   gnu: perl-czplib: Fix installation directory.
      adds  e366521   gnu: crawl, crawl-tiles: Update to 0.23.1.
      adds  5b8f892   gnu: octave, octave-cli: Update to 5.1.0.
      adds  afeb10a   gnu: Add bowtie1.
      adds  cb66fb1   gnu: Add r-scde.
      adds  1564e0f   gnu: Add fuseiso.
      adds  38502a7   gnu: bismark: Update to 0.20.1.
      adds  a9eeda2   gnu: valgrind: Add download mirror.
      adds  dff7936   gnu: fuseiso: Fix typo.
      adds  7016e62   gnu: python-mako: Update home page.
       new  f339df4   Merge branch 'master' into staging
       new  350b7f8   gnu: valgrind: Update to 3.14.0.

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/artwork.scm                                  |   4 +-
 gnu/build/linux-modules.scm                      |  29 ++-
 gnu/local.mk                                     |   2 +-
 gnu/packages/admin.scm                           |   6 +-
 gnu/packages/bioconductor.scm                    |  26 +++
 gnu/packages/bioinformatics.scm                  | 184 ++++++++++++---
 gnu/packages/emacs-xyz.scm                       |   4 +-
 gnu/packages/emacs.scm                           |   6 +-
 gnu/packages/fonts.scm                           |  47 ++--
 gnu/packages/games.scm                           |  19 +-
 gnu/packages/gimp.scm                            |   4 +-
 gnu/packages/gl.scm                              |   7 +-
 gnu/packages/gnome.scm                           |   8 +-
 gnu/packages/golang.scm                          |   4 +-
 gnu/packages/guile-xyz.scm                       |  57 +++++
 gnu/packages/java.scm                            |  37 ++-
 gnu/packages/linux.scm                           | 178 ++++++++++-----
 gnu/packages/man.scm                             |   4 +-
 gnu/packages/maths.scm                           |   4 +-
 gnu/packages/mpd.scm                             |   4 +-
 gnu/packages/patches/rust-1.30-gdb-llvm.patch    |  89 ++++++++
 gnu/packages/patches/valgrind-glibc-compat.patch |  18 --
 gnu/packages/perl.scm                            |  26 ++-
 gnu/packages/python-xyz.scm                      |   6 +-
 gnu/packages/ruby.scm                            | 166 +++++++++++++-
 gnu/packages/rust.scm                            |  83 ++++++-
 gnu/packages/syncthing.scm                       |   4 +-
 gnu/packages/uml.scm                             |   7 +-
 gnu/packages/valgrind.scm                        |  23 +-
 gnu/packages/video.scm                           |  69 +++++-
 gnu/packages/virtualization.scm                  |  12 +-
 gnu/packages/vulkan.scm                          | 278 +++++++++++------------
 gnu/packages/wget.scm                            |  90 ++++----
 gnu/packages/xorg.scm                            |   4 +-
 34 files changed, 1090 insertions(+), 419 deletions(-)
 create mode 100644 gnu/packages/patches/rust-1.30-gdb-llvm.patch
 delete mode 100644 gnu/packages/patches/valgrind-glibc-compat.patch