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05/05: gnu: Add r-org-dr-eg-db.
From: |
guix-commits |
Subject: |
05/05: gnu: Add r-org-dr-eg-db. |
Date: |
Wed, 6 Mar 2019 04:31:09 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 3dad6087beaef0ff5343858f26b0c1ec7e328c16
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 6 10:29:25 2019 +0100
gnu: Add r-org-dr-eg-db.
* gnu/packages/bioconductor.scm (r-org-dr-eg-db): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ae9d707..ed950d5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -170,6 +170,32 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks
are \"active\" by
default." )
(license license:artistic2.0)))
+(define-public r-org-dr-eg-db
+ (package
+ (name "r-org-dr-eg-db")
+ (version "3.7.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "org.Dr.eg.db_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx"))))
+ (properties
+ `((upstream-name . "org.Dr.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://www.bioconductor.org/packages/org.Dr.eg.db/")
+ (synopsis "Annotation for Zebrafish")
+ (description
+ "This package provides genome wide annotations for Zebrafish, primarily
+based on mapping using Entrez Gene identifiers.")
+ (license license:artistic2.0)))
+
(define-public r-genelendatabase
(package
(name "r-genelendatabase")