01/01: gnu: Add r-absfiltergsea.

[Leo Famulari]

lfam pushed a commit to branch master
in repository guix.

commit 0f1622220a39a620854b0a268793e262746d460a
Author: pimi <address@hidden>
Date:   Tue Oct 2 16:23:12 2018 -0400

    gnu: Add r-absfiltergsea.
    
    * gnu/packages/bioinformatics.scm (r-absfiltergsea): New variable.
---
 gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 172832d..b657bf6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13938,3 +13938,30 @@ generated by nanopore sequencing devices for the 
purposes of quality control and
 downstream analysis.  Poretools operates directly on the native FAST5, a 
variant
 of the Hierarchical Data Format (HDF5) standard.")
       (license license:expat))))
+
+(define-public r-absfiltergsea
+  (package
+    (name "r-absfiltergsea")
+    (version "1.5.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "AbsFilterGSEA" version))
+       (sha256
+        (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
+    (properties `((upstream-name . "AbsFilterGSEA")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-deseq" ,r-deseq)
+       ("r-limma" ,r-limma)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)))
+    (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/";)
+    (synopsis "Improved false positive control of gene-permuting with absolute 
filtering")
+    (description
+     "This package provides a function that performs gene-permuting of a 
gene-set
+enrichment analysis (GSEA) calculation with or without the absolute filtering.
+  Without filtering, users can perform (original) two-tailed or one-tailed
+absolute GSEA.")
+    (license license:gpl2)))