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24/30: gnu: Add r-fithic.
From: |
Ricardo Wurmus |
Subject: |
24/30: gnu: Add r-fithic. |
Date: |
Tue, 7 Nov 2017 17:32:59 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 30eb4e37c8b24c3e8ecdc1147035d1735816fa94
Author: Ricardo Wurmus <address@hidden>
Date: Tue Nov 7 17:26:00 2017 +0100
gnu: Add r-fithic.
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f53b17b..60772b5 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10142,6 +10142,30 @@ EMBL-EBI GWAS catalog.")
visualizations for publication-quality multi-panel figures.")
(license license:gpl2+)))
+(define-public r-fithic
+ (package
+ (name "r-fithic")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "FitHiC" version))
+ (sha256
+ (base32
+ "12ylhrppi051m7nqsgq95kzd9g9wmp34i0zzfi55cjqawlpx7c6n"))))
+ (properties `((upstream-name . "FitHiC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-data-table" ,r-data-table)
+ ("r-fdrtool" ,r-fdrtool)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://bioconductor.org/packages/FitHiC")
+ (synopsis "Confidence estimation for intra-chromosomal contact maps")
+ (description
+ "Fit-Hi-C is a tool for assigning statistical confidence estimates to
+intra-chromosomal contact maps produced by genome-wide genome architecture
+assays such as Hi-C.")
+ (license license:gpl2+)))
+
(define-public r-qvalue
(package
(name "r-qvalue")
- 08/30: gnu: Add r-ggbio., (continued)
- 08/30: gnu: Add r-ggbio., Ricardo Wurmus, 2017/11/07
- 09/30: gnu: Add r-gprofiler., Ricardo Wurmus, 2017/11/07
- 16/30: gnu: Add r-mice., Ricardo Wurmus, 2017/11/07
- 26/30: gnu: Add r-rsofia., Ricardo Wurmus, 2017/11/07
- 13/30: gnu: Add r-homo-sapiens., Ricardo Wurmus, 2017/11/07
- 15/30: gnu: Add r-ldblock., Ricardo Wurmus, 2017/11/07
- 12/30: gnu: Add r-org-hs-eg-db., Ricardo Wurmus, 2017/11/07
- 29/30: gnu: r-prabclus: Update description., Ricardo Wurmus, 2017/11/07
- 18/30: gnu: Add r-gqtlstats., Ricardo Wurmus, 2017/11/07
- 19/30: gnu: Add r-gviz., Ricardo Wurmus, 2017/11/07
- 24/30: gnu: Add r-fithic.,
Ricardo Wurmus <=
- 25/30: gnu: Add r-hitc., Ricardo Wurmus, 2017/11/07
- 23/30: gnu: Add r-sushi., Ricardo Wurmus, 2017/11/07
- 14/30: gnu: Add r-erma., Ricardo Wurmus, 2017/11/07
- 17/30: gnu: Add r-hardyweinberg., Ricardo Wurmus, 2017/11/07
- 21/30: gnu: Add r-sm., Ricardo Wurmus, 2017/11/07
- 30/30: gnu: Add glusterfs., Ricardo Wurmus, 2017/11/07
- 27/30: gnu: Add r-bbmle., Ricardo Wurmus, 2017/11/07
- 28/30: gnu: r-fdrtool: Update description., Ricardo Wurmus, 2017/11/07
- 22/30: gnu: Add r-vioplot., Ricardo Wurmus, 2017/11/07
- 20/30: gnu: Add r-gwascat., Ricardo Wurmus, 2017/11/07