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01/01: gnu: Add r-bsgenome-mmusculus-ucsc-mm10.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: Add r-bsgenome-mmusculus-ucsc-mm10. |
Date: |
Wed, 15 Jun 2016 15:08:38 +0000 (UTC) |
rekado pushed a commit to branch master
in repository guix.
commit 4714d521e3b5bcc6e2800ab377cb470cab09a595
Author: Ricardo Wurmus <address@hidden>
Date: Tue Jun 14 14:50:30 2016 +0200
gnu: Add r-bsgenome-mmusculus-ucsc-mm10.
* gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10): New
variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 58877f7..04ed769 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5019,6 +5019,38 @@ by UCSC (hg19, February 2009) and stored in Biostrings
objects.")
provided by UCSC (mm9, July 2007) and stored in Biostrings objects.")
(license license:artistic2.0)))
+(define-public r-bsgenome-mmusculus-ucsc-mm10
+ (package
+ (name "r-bsgenome-mmusculus-ucsc-mm10")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Mmusculus.UCSC.mm10_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
+ (properties
+ `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+ "http://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/")
+ (synopsis "Full genome sequences for Mouse")
+ (description
+ "This package provides full genome sequences for Mus
+musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
+in Biostrings objects.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-celegans-ucsc-ce6
(package
(name "r-bsgenome-celegans-ucsc-ce6")