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01/01: gnu: Add hmmer.
From: |
Mark H. Weaver |
Subject: |
01/01: gnu: Add hmmer. |
Date: |
Wed, 24 Jun 2015 04:39:38 +0000 |
mhw pushed a commit to branch master
in repository guix.
commit c684629f7c0cd9246ac395514e5b14ea118529cd
Author: Ben Woodcroft <address@hidden>
Date: Wed Jun 24 11:51:05 2015 +1000
gnu: Add hmmer.
* gnu/packages/bioinformatics.scm (hmmer): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 files changed, 29 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e130336..31df219 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1032,6 +1032,35 @@ several alignment strategies enable effective alignment
of RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
+(define-public hmmer
+ (package
+ (name "hmmer")
+ (version "3.1b2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://selab.janelia.org/software/hmmer"
+ (version-prefix version 1) "/"
+ version "/hmmer-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))))
+ (build-system gnu-build-system)
+ (native-inputs `(("perl", perl)))
+ (home-page "http://hmmer.janelia.org")
+ (synopsis "Biosequence analysis using profile hidden Markov models")
+ (description
+ "HMMER is used for searching sequence databases for homologs of protein
+sequences, and for making protein sequence alignments. It implements methods
+using probabilistic models called profile hidden Markov models (profile
+HMMs).")
+ (license (list license:gpl3+
+ ;; The bundled library 'easel' is distributed
+ ;; under The Janelia Farm Software License.
+ (license:non-copyleft
+ "file://easel/LICENSE"
+ "See easel/LICENSE in the distribution.")))))
+
(define-public htseq
(package
(name "htseq")