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35/66: gnu: bamtools: Set rpath via LDFLAGS.
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From: |
Manolis Fragkiskos Ragkousis |
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Subject: |
35/66: gnu: bamtools: Set rpath via LDFLAGS. |
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Date: |
Thu, 21 May 2015 12:52:00 +0000 |
phant0mas pushed a commit to branch wip-hurd
in repository guix.
commit 9db3c739e90de05d2724b483f49fee9f1237dd4f
Author: Ricardo Wurmus <address@hidden>
Date: Mon May 4 11:27:39 2015 +0200
gnu: bamtools: Set rpath via LDFLAGS.
* gnu/packages/bioinformatics.scm (bamtools): Add a pre-configure phase
setting $LDFLAGS to set the rpath to $out/lib/bamtools.
---
gnu/packages/bioinformatics.scm | 12 +++++++++++-
1 files changed, 11 insertions(+), 1 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8bc5b86..7dc1bc4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -62,7 +62,17 @@
(base32
"1brry29bw2xr2l9pqn240rkqwayg85b8qq78zk2zs6nlspk4d018"))))
(build-system cmake-build-system)
- (arguments `(#:tests? #f)) ;no "check" target
+ (arguments
+ `(#:tests? #f ;no "check" target
+ #:phases
+ (modify-phases %standard-phases
+ (add-before
+ 'configure 'set-ldflags
+ (lambda* (#:key outputs #:allow-other-keys)
+ (setenv "LDFLAGS"
+ (string-append
+ "-Wl,-rpath="
+ (assoc-ref outputs "out") "/lib/bamtools")))))))
(inputs `(("zlib" ,zlib)))
(home-page "https://github.com/pezmaster31/bamtools";)
(synopsis "C++ API and command-line toolkit for working with BAM data")
- 27/66: gnu: Add totem-pl-parser., (continued)
- 27/66: gnu: Add totem-pl-parser., Manolis Fragkiskos Ragkousis, 2015/05/21
- 28/66: guix package: Move profile cleaning out of 'search-path-environment-variables'., Manolis Fragkiskos Ragkousis, 2015/05/21
- 29/66: guix package: Introduce 'evaluate-search-paths'., Manolis Fragkiskos Ragkousis, 2015/05/21
- 30/66: gnu: gcc-5.1: Add specific libvtv patch., Manolis Fragkiskos Ragkousis, 2015/05/21
- 24/66: gnu: Add zeromq., Manolis Fragkiskos Ragkousis, 2015/05/21
- 32/66: gnu: samtools: Install libbam.a library., Manolis Fragkiskos Ragkousis, 2015/05/21
- 38/66: doc: Fix dangling references in the 'sh-symlink' monad example., Manolis Fragkiskos Ragkousis, 2015/05/21
- 37/66: doc: Suggest 'groupadd --system'., Manolis Fragkiskos Ragkousis, 2015/05/21
- 34/66: gnu: Add taskwarrior., Manolis Fragkiskos Ragkousis, 2015/05/21
- 39/66: gnu: Add python-sympy., Manolis Fragkiskos Ragkousis, 2015/05/21
- 35/66: gnu: bamtools: Set rpath via LDFLAGS.,
Manolis Fragkiskos Ragkousis <=
- 33/66: gnu: Add samtools-0.1.19., Manolis Fragkiskos Ragkousis, 2015/05/21
- 31/66: gnu: samtools: Remove patch-makefile-curses phase., Manolis Fragkiskos Ragkousis, 2015/05/21
- 36/66: doc: Clarify installation from the binary tarball., Manolis Fragkiskos Ragkousis, 2015/05/21
- 43/66: substitute: Increase TTL from 24h to 36h., Manolis Fragkiskos Ragkousis, 2015/05/21
- 40/66: gnu: curl: Update to 7.42.1., Manolis Fragkiskos Ragkousis, 2015/05/21
- 44/66: gnu: Add markdown., Manolis Fragkiskos Ragkousis, 2015/05/21
- 47/66: search-paths: Add 'environment-variable-definition'., Manolis Fragkiskos Ragkousis, 2015/05/21
- 49/66: profiles: Use a &message error condition instead of 'error'., Manolis Fragkiskos Ragkousis, 2015/05/21
- 48/66: search-paths: 'evaluate-search-paths' now returns spec/value pairs., Manolis Fragkiskos Ragkousis, 2015/05/21
- 42/66: gnu: Add libwpg., Manolis Fragkiskos Ragkousis, 2015/05/21