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01/01: gnu: Add python2-pbcore.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: Add python2-pbcore. |
Date: |
Tue, 24 Mar 2015 13:59:06 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 19ee92014488fe7037477dbe0b1999feae9ac59c
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 20 12:39:50 2015 +0100
gnu: Add python2-pbcore.
* gnu/packages/bioinformatics.scm (python2-pbcore): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 files changed, 29 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1214a0b..fc0ce4a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -615,6 +615,35 @@ RNA-Seq, the MISO model uses Bayesian inference to compute
the probability
that a read originated from a particular isoform.")
(license license:gpl2)))
+(define-public python2-pbcore
+ (package
+ (name "python2-pbcore")
+ (version "0.9.3")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/PacificBiosciences/pbcore/archive/"
+ version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1z46rwjac93jm87cbj2zgjg6qvsgs65140wkbbxsvxps7ai4pm09"))))
+ (build-system python-build-system)
+ (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7
+ (inputs
+ `(("python-cython" ,python2-cython)
+ ("python-numpy" ,python2-numpy)
+ ("python-pysam" ,python2-pysam)
+ ("python-h5py" ,python2-h5py)))
+ (native-inputs
+ `(("python-setuptools" ,python2-setuptools)))
+ (home-page "http://pacificbiosciences.github.io/pbcore/")
+ (synopsis "Library for reading and writing PacBio data files")
+ (description
+ "The pbcore package provides Python APIs for interacting with PacBio data
+files and writing bioinformatics applications.")
+ (license license:bsd-3)))
+
(define-public rseqc
(package
(name "rseqc")