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[gnuastro-commits] master be3bfd8 033/113: NoiseChisel configuration fil
From: |
Mohammad Akhlaghi |
Subject: |
[gnuastro-commits] master be3bfd8 033/113: NoiseChisel configuration file in 3D updated |
Date: |
Fri, 16 Apr 2021 10:33:38 -0400 (EDT) |
branch: master
commit be3bfd81924a799ad1c607627a33959703a3ebc0
Author: Mohammad Akhlaghi <akhlaghi@gnu.org>
Commit: Mohammad Akhlaghi <akhlaghi@gnu.org>
NoiseChisel configuration file in 3D updated
After some tests on real MUSE data, the configuration file for NoiseChisel
was udpated to give more reasonable results. The previous values were
mainly taken from the 2D image configuration file. But the nature of 3D
data differs thus some parameters need to be changed. As a result the new
NoiseChisel 3D configuration file now has the full set of parameters.
---
bin/noisechisel/astnoisechisel-3d.conf | 45 ++++++++++++++++++++++++++++------
1 file changed, 37 insertions(+), 8 deletions(-)
diff --git a/bin/noisechisel/astnoisechisel-3d.conf
b/bin/noisechisel/astnoisechisel-3d.conf
index ee8007b..fa4f4eb 100644
--- a/bin/noisechisel/astnoisechisel-3d.conf
+++ b/bin/noisechisel/astnoisechisel-3d.conf
@@ -17,13 +17,42 @@
# this notice are preserved. This file is offered as-is, without any
# warranty.
+# Input:
+ khdu 1
+ wkhdu 1
+ minskyfrac 0.7
+ minnumfalse 100
+
# Tessellation
- numchannels 1,1,1
- tilesize 20,20,20
- largetilesize 50,50,50
+ numchannels 1,1,1
+ tilesize 15,15,15
+ largetilesize 50,50,50
+
+# Detection:
+ mirrordist 1.5
+ modmedqdiff 0.01
+ qthresh 0.3
+ qthreshtilequant 1
+ smoothwidth 3
+ erode 1
+ erodengb 6
+ noerodequant 0.9331
+ opening 1
+ openingngb 18
+ sigmaclip 3,0.2
+ dthresh -0.1
+ detsnminarea 10
+ detquant 0.90
+ detgrowquant 0.95
+ detgrowmaxholesize 300
+
+# Segmentation
+ segsnminarea 15
+ keepmaxnearriver 0
+ segquant 0.95
+ gthresh 0.5
+ minriverlength 15
+ objbordersn 1
-# Detection
- erodengb 6
- openingngb 18
- detgrowquant 0.85
- detgrowmaxholesize 300
\ No newline at end of file
+# Operating mode
+ continueaftercheck 0
- [gnuastro-commits] master 5abb468 008/113: Other minor corrections in the documentation, (continued)
- [gnuastro-commits] master 5abb468 008/113: Other minor corrections in the documentation, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 3e76e1f 010/113: MakeProfiles --kernel builds 3D kernels also, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 81f3f65 023/113: More --coordcol options acceptable in Crop, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master e47f8db 024/113: Merged recent work in master, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 8fa5ff1 026/113: Minor edit in book (part added in last commit), Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 40f0a56 013/113: Minor corrections to MakeProfiles continued, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 8372486 020/113: NoiseChisel's detection complete in 3D, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 6cc3d25 027/113: No 3D projections in function to inspect NoiseChisel outputs, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master e990860 029/113: Merged recent updates in master, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 6bdc5d6 030/113: Oversegmentation connectivity one less for 3D, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master be3bfd8 033/113: NoiseChisel configuration file in 3D updated,
Mohammad Akhlaghi <=
- [gnuastro-commits] master 3b6c15d 036/113: Merged with recent work in master, no conflicts, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master fb3660f 037/113: MakeCatalog works in 3D, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 73fdf0c 006/113: MakeProfiles builds 3D ellipsoids, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 03d73fe 011/113: Some minor corrections in code and comments, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 87ab805 014/113: Identifiers for integer constants in BZERO comparisons, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 1483201 009/113: Noised cube created in make check, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master bdeaba9 012/113: Corrected name of 3D catalog for tarball inclusion, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master 6b53c5e 015/113: Bug fixes in master: commits 1ff1c25 and 540af65, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master adeb1c6 016/113: NoiseChisel's convolution step in 3D completed, Mohammad Akhlaghi, 2021/04/16
- [gnuastro-commits] master ace4160 017/113: New --mcolisbrightness option for MakeProfiles, Mohammad Akhlaghi, 2021/04/16