configure: WARNING: unrecognized options: --with-myconfig checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether to enable maintainer-specific portions of Makefiles... no checking whether we are using development sources... yes **************************************************************** * Checking compiler characteristics and MPI support * **************************************************************** checking for style of include used by make... GNU checking whether to compile using MPI... yes checking for mpic++... no checking for mpicxx... no checking for mpiCC... mpiCC checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking dependency style of mpiCC... gcc3 checking for function MPI_Init... yes checking for mpi.h... yes checking for mpiexec... no checking for the mympiexec user script... /g/g14/ustach2/espresso/test/espresso/build/mympiexec.sh checking whether the compiler accepts -O5... yes checking whether the compiler accepts -Wall... yes checking whether mpiCC understands -c and -o together... yes **************************************************************** * Checking for programs * **************************************************************** checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 3458764513820540925 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking dependency style of mpiCC... (cached) gcc3 checking how to run the C++ preprocessor... mpiCC -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/local/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for ld used by mpiCC... /usr/local/bin/ld -m elf_x86_64 checking if the linker (/usr/local/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the mpiCC linker (/usr/local/bin/ld -m elf_x86_64) supports shared libraries... yes checking for mpiCC option to produce PIC... -fPIC -DPIC checking if mpiCC PIC flag -fPIC -DPIC works... yes checking if mpiCC static flag -static works... yes checking if mpiCC supports -c -o file.o... yes checking if mpiCC supports -c -o file.o... (cached) yes checking whether the mpiCC linker (/usr/local/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gawk... (cached) gawk checking for egrep... (cached) /bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking for doxygen... /usr/bin/doxygen checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for bibtex... /usr/bin/bibtex **************************************************************** * Checking for standard headers * **************************************************************** checking for ANSI C header files... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes **************************************************************** * Checking for standard functions * **************************************************************** checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sys/socket.h... (cached) yes checking types of arguments for select... int,fd_set *,struct timeval * checking for size_t... yes checking for working strtod... yes checking for atexit... yes checking for floor... yes checking for getcwd... yes checking for gethostbyname... yes checking for memset... yes checking for pow... yes checking for rint... yes checking for select... yes checking for socket... yes checking for sqrt... yes **************************************************************** * Checking for required tools and libraries * **************************************************************** checking whether to use FFTW... FFTW checking for library containing fftw_plan_many_dft... -lfftw3 checking fftw3.h usability... yes checking fftw3.h presence... yes checking for fftw3.h... yes checking whether to use CUDA... /opt/cudatoolkit-5.5 checking for nvcc... /opt/cudatoolkit-5.5/bin/nvcc checking if /opt/cudatoolkit-5.5/bin/nvcc supports -c -o file.o... no checking if /opt/cudatoolkit-5.5/bin/nvcc supports -c -o file.o... (cached) no checking whether the /opt/cudatoolkit-5.5/bin/nvcc linker (/usr/local/bin/ld -m elf_x86_64) supports shared libraries... yes checking how to hardcode library paths into programs... immediate checking for libcudart... yes checking for libcufft... yes checking whether CUDA compiles... yes checking whether CUDA runs... yes **************************************************************** * Checking for Python * **************************************************************** checking for a Python interpreter with version >= 2.5... python checking for python... /usr/local/bin/python checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/site-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/site-packages checking whether python -B works... yes checking whether to build the python interface... no **************************************************************** * Checking for Tcl/Tk * **************************************************************** checking whether to build the Tcl interface... yes checking for libtcl8.6... no checking for libtcl8.5... yes checking for tcl.h... yes checking whether to use Tk... yes **************************************************************** * Other settings * **************************************************************** checking whether to use efence... no checking whether the variable MYCONFIG is set... no checking the number of available CPUs... 12 **************************************************************** * Creating output files * **************************************************************** configure: creating ./config.status config.status: creating Makefile config.status: creating config/Makefile config.status: creating config/myconfig-sample-header.hpp config.status: creating src/Makefile config.status: creating src/tcl/Makefile config.status: creating src/python/Makefile config.status: creating tools/Makefile config.status: creating scripts/Makefile config.status: creating testsuite/Makefile config.status: creating doc/Makefile config.status: creating doc/logo/Makefile config.status: creating doc/ug/Makefile config.status: creating doc/dg/Makefile config.status: creating doc/doxygen/Makefile config.status: creating doc/tutorials/Makefile config.status: creating doc/tutorials/01-lennard_jones/Makefile config.status: creating doc/tutorials/02-charged_system/Makefile config.status: creating doc/latexit.sh config.status: creating testsuite/runtest.sh config.status: creating tools/es_mpiexec config.status: creating src/acconfig.hpp config.status: executing depfiles commands config.status: executing libtool commands config.status: executing myconfig-sample.hpp commands configure: WARNING: unrecognized options: --with-myconfig **************************************************************** * Configuration summary * **************************************************************** platform detected = x86_64-unknown-linux-gnu package version = 3.2.0-678-g31c4458 development sources = yes Compiler -------- compiler = mpiCC linker = /usr/local/bin/ld -m elf_x86_64 c++ compiler flags = -Wall -O5 c++ preprocessor flags = linker flags = -L/opt/cudatoolkit-5.5/lib64 libraries = -ltcl8.5 -lcufft -lcudart -lfftw3 -lm using debug flags = using profiling flags = Libraries --------- FFTW = yes efence = no Tcl/Tk ------ Tcl version = tcl8.5 Tk version = none Python ------ python = /usr/local/bin/python -B build python interface = no Other settings -------------- config = myconfig.hpp installation prefix = /g/g14/ustach2/Espresso number of test tasks = 12 mympiexec = /g/g14/ustach2/espresso/test/espresso/build/mympiexec.sh mpiexec = no pdflatex = /usr/bin/pdflatex makeindex = /usr/bin/makeindex bibtex = /usr/bin/bibtex doxygen = /usr/bin/doxygen dot = /usr/bin/dot Not building Python interface.