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From: | guozhicheng222 |
Subject: | [ESPResSo-users] running on cluster |
Date: | Tue, 26 Nov 2013 12:59:04 +0800 (CST) |
Hi:
I find the strange error when I am running the simulation in cluster. It is working on main node of cluster, however, crashed on subordinate node of cluster. I checked the error message on subordinate node as described below:
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
/gpfs/home/lsd001/espresso-3.2.0/bin/Espresso: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
In addition, I used "ldd Espresso" command to check the configuration of 'libfftw3.so.3' and found that it's correct as following. I'm really confused about this matter. Anyone can help me to fix it? Thanks in advance for your suggestion.
linux-vdso.so.1 => (0x00007fffe09fc000)
libfftw3.so.3 => /usr/lib/libfftw3.so.3 (0x00002b5cca25f000)
libtk8.6.so => /usr/local/lib/libtk8.6.so (0x00002b5cca51e000)
libtcl8.6.so => /usr/local/lib/libtcl8.6.so (0x00002b5cca764000)
libm.so.6 => /lib64/libm.so.6 (0x00002b5cca9bd000)
libSM.so.6 => /usr/X11R6/lib64/libSM.so.6 (0x00002b5ccab12000)
libICE.so.6 => /usr/X11R6/lib64/libICE.so.6 (0x00002b5ccac1d000)
libX11.so.6 => /usr/X11R6/lib64/libX11.so.6 (0x00002b5ccad38000)
libmpi.so.1 => /gpfs/home/lsd001/openmpi-1.6.5/lib/libmpi.so.1 (0x00002b5ccaf46000)
libdl.so.2 => /lib64/libdl.so.2 (0x00002b5ccb263000)
libnuma.so.1 => /usr/lib64/libnuma.so.1 (0x00002b5ccb367000)
librt.so.1 => /lib64/librt.so.1 (0x00002b5ccb46c000)
libnsl.so.1 => /lib64/libnsl.so.1 (0x00002b5ccb576000)
libutil.so.1 => /lib64/libutil.so.1 (0x00002b5ccb68c000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00002b5ccb78f000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00002b5ccb89d000)
libc.so.6 => /lib64/libc.so.6 (0x00002b5ccb9b6000)
libXft.so.2 => /usr/X11R6/lib64/libXft.so.2 (0x00002b5ccbbf6000)
libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x00002b5ccbd0c000)
libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1 (0x00002b5ccbe87000)
libXrender.so.1 => /usr/X11R6/lib64/libXrender.so.1 (0x00002b5ccbfca000)
libXss.so.1 => /usr/X11R6/lib64/libXss.so.1 (0x00002b5ccc0d4000)
libXext.so.6 => /usr/X11R6/lib64/libXext.so.6 (0x00002b5ccc1d7000)
libz.so.1 => /lib64/libz.so.1 (0x00002b5ccc2e8000)
libimf.so => /gpfs/hpc/intel/Compiler/11.1/064/lib/intel64/libimf.so (0x00002b5ccc3fd000)
libsvml.so => /gpfs/hpc/intel/Compiler/11.1/064/lib/intel64/libsvml.so (0x00002b5ccc78f000)
libintlc.so.5 => /gpfs/hpc/intel/Compiler/11.1/064/lib/intel64/libintlc.so.5 (0x00002b5ccc9a5000)
/lib64/ld-linux-x86-64.so.2 (0x00002b5cca143000)
libexpat.so.1 => /usr/lib64/libexpat.so.1 (0x00002b5cccae3000)
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