Making all in config make[1]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/config' /usr/bin/python -B ./gen_sampleconfig.py ../src/features.def myconfig-sample-body.h Reading definitions from ../src/features.def... Done. Writing myconfig-sample-body.h... make[1]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/config' Making all in src make[1]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/src' Determining myconfig file... ../src/myconfig-default.h /usr/bin/python -B ../config/gen_featureconfig.py ./features.def config-features.h config-features.c Reading definitions from ./features.def... Done. Writing config-features.h... Done. Writing config-features.c... Done. VERSION=`cd ..; sh config/genversion.sh -c`; \ if ! test -e "config-version.c" || \ test "$VERSION" != "`cat config-version.c`"; then \ echo "$VERSION" > config-version.c; \ fi make all-am make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/src' Determining myconfig file... ../src/myconfig-default.h depbase=`echo config-features.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT config-features.o -MD -MP -MF $depbase.Tpo -c -o config-features.o config-features.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo adresso.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT adresso.o -MD -MP -MF $depbase.Tpo -c -o adresso.o adresso.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo cells.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT cells.o -MD -MP -MF $depbase.Tpo -c -o cells.o cells.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo collision.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT collision.o -MD -MP -MF $depbase.Tpo -c -o collision.o collision.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo communication.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT communication.o -MD -MP -MF $depbase.Tpo -c -o communication.o communication.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo comfixed.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT comfixed.o -MD -MP -MF $depbase.Tpo -c -o comfixed.o comfixed.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo comforce.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT comforce.o -MD -MP -MF $depbase.Tpo -c -o comforce.o comforce.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo constraint.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT constraint.o -MD -MP -MF $depbase.Tpo -c -o 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$depbase.Tpo -c -o tab.o tab.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo tunable_slip.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT tunable_slip.o -MD -MP -MF $depbase.Tpo -c -o tunable_slip.o tunable_slip.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo angle.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT angle.o -MD -MP -MF $depbase.Tpo -c -o angle.o angle.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo angledist.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT angledist.o -MD -MP -MF $depbase.Tpo -c -o angledist.o angledist.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo dihedral.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT dihedral.o -MD -MP -MF $depbase.Tpo -c -o dihedral.o dihedral.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo endangledist.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT endangledist.o -MD -MP -MF $depbase.Tpo -c -o endangledist.o endangledist.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo fene.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT fene.o -MD -MP -MF $depbase.Tpo -c -o fene.o fene.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo harmonic.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT harmonic.o -MD -MP -MF $depbase.Tpo -c -o harmonic.o harmonic.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo overlap.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT overlap.o -MD -MP -MF $depbase.Tpo -c -o overlap.o overlap.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo subt_lj.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT subt_lj.o -MD -MP -MF $depbase.Tpo -c -o subt_lj.o subt_lj.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo debye_hueckel.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT debye_hueckel.o -MD -MP -MF $depbase.Tpo -c -o debye_hueckel.o debye_hueckel.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo elc.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT elc.o -MD -MP -MF $depbase.Tpo -c -o elc.o elc.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo ewald.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT ewald.o -MD -MP -MF $depbase.Tpo -c -o ewald.o ewald.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo magnetic_non_p3m_methods.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT magnetic_non_p3m_methods.o -MD -MP -MF $depbase.Tpo -c -o magnetic_non_p3m_methods.o magnetic_non_p3m_methods.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo mdlc_correction.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT mdlc_correction.o -MD -MP -MF $depbase.Tpo -c -o mdlc_correction.o mdlc_correction.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo maggs.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT maggs.o -MD -MP -MF $depbase.Tpo -c -o maggs.o maggs.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo mmm1d.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT mmm1d.o -MD -MP -MF $depbase.Tpo -c -o mmm1d.o mmm1d.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo mmm2d.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT mmm2d.o -MD -MP -MF $depbase.Tpo -c -o mmm2d.o mmm2d.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo mmm-common.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT mmm-common.o -MD -MP -MF $depbase.Tpo -c -o mmm-common.o mmm-common.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo p3m.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT p3m.o -MD -MP -MF $depbase.Tpo -c -o p3m.o p3m.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo p3m-common.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT p3m-common.o -MD -MP -MF $depbase.Tpo -c -o p3m-common.o p3m-common.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo p3m-dipolar.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT p3m-dipolar.o -MD -MP -MF $depbase.Tpo -c -o p3m-dipolar.o p3m-dipolar.c &&\ mv -f $depbase.Tpo $depbase.Po depbase=`echo reaction_field.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT reaction_field.o -MD -MP -MF $depbase.Tpo -c -o reaction_field.o reaction_field.c &&\ mv -f $depbase.Tpo $depbase.Po VERSION=`cd ..; sh config/genversion.sh -c`; \ if ! test -e "config-version.c" || \ test "$VERSION" != "`cat config-version.c`"; then \ echo "$VERSION" > config-version.c; \ fi depbase=`echo config-version.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\ cc -std=gnu99 -DHAVE_CONFIG_H -I. -IFTW_INC -MT config-version.o -MD -MP -MF $depbase.Tpo -c -o config-version.o config-version.c &&\ mv -f $depbase.Tpo $depbase.Po rm -f libEspresso.a ar cru libEspresso.a config-features.o adresso.o cells.o collision.o communication.o comfixed.o comforce.o constraint.o debug.o domain_decomposition.o energy.o errorhandling.o fft.o fft-common.o fft-dipolar.o forces.o ghosts.o global.o grid.o halo.o iccp3m.o imd.o initialize.o integrate.o interaction_data.o lattice.o layered.o lb.o lb-boundaries.o lbgpu_cfile.o metadynamics.o modes.o molforces.o mol_cut.o nemd.o nsquare.o particle_data.o polymer.o pressure.o random.o rattle.o rotation.o specfunc.o statistics.o statistics_chain.o statistics_cluster.o statistics_correlation.o statistics_fluid.o statistics_molecule.o statistics_observable.o thermostat.o topology.o tuning.o uwerr.o verlet.o virtual_sites.o virtual_sites_com.o virtual_sites_relative.o vmdsock.o bmhtf-nacl.o buckingham.o dpd.o gb.o hertzian.o lj.o ljangle.o ljcos.o ljcos2.o ljgen.o morse.o soft_sphere.o steppot.o tab.o tunable_slip.o angle.o angledist.o dihedral.o endangledist.o fene.o harmonic.o overlap.o subt_lj.o debye_hueckel.o elc.o ewald.o magnetic_non_p3m_methods.o mdlc_correction.o maggs.o mmm1d.o mmm2d.o mmm-common.o p3m.o p3m-common.o p3m-dipolar.o reaction_field.o config-features.o config-version.o ranlib libEspresso.a make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/src' make[1]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/src' Making all in . make[1]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0' cd .; sh config/genversion.sh -rd > /zhome/academic/HLRS/xmz/xmzzhouj/dir/default/xmzzhouj-colloid_ac-0/espresso-3.1.0/version.txt test -e Espresso || ln -s src/Espresso . cat config/myconfig-sample-header.h > myconfig-sample.h cat config/myconfig-sample-body.h >> myconfig-sample.h make[1]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0' Making all in scripts make[1]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/scripts' for file in init.tcl ABHmath.tcl auxiliary.tcl blockfile_support.tcl bundle.tcl countBonds.tcl dielectrics.tcl pdb.tcl polymer.tcl statistics.tcl vtf.tcl tclline.tcl parallel_tempering.tcl; do \ if test ! -e $file || test ! $file -ef /zhome/academic/HLRS/xmz/xmzzhouj/dir/default/xmzzhouj-colloid_ac-0/espresso-3.1.0/scripts/$file; then \ /usr/bin/install -c -m 644 /zhome/academic/HLRS/xmz/xmzzhouj/dir/default/xmzzhouj-colloid_ac-0/espresso-3.1.0/scripts/$file /zhome/academic/HLRS/xmz/xmzzhouj/dir/default/xmzzhouj-colloid_ac-0/espresso-3.1.0/scripts; \ fi; \ done make[1]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/scripts' Making all in tools make[1]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/tools' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/tools' Making all in testsuite make[1]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/testsuite' Making all in configs make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/testsuite/configs' for file in myconfig-empty.h myconfig-nofftw.h myconfig-compileonly.h myconfig-maxset.h myconfig-restcompile1.h myconfig-restcompile2.h myconfig-LB.h myconfig-LBGPU.h myconfig-tunableslip.h myconfig-adress.h; do \ if ! test -e $file; then \ ln -s ./$file .; \ fi; \ done make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/testsuite/configs' Making all in . make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/testsuite' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/testsuite' make[1]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/testsuite' Making all in doc make[1]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc' Making all in logo make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/logo' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/logo' Making all in doxygen make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/doxygen' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/doxygen' Making all in dg make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/dg' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/dg' Making all in ug make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/ug' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/ug' Making all in tutorials make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials' Making all in 01-lennard_jones make[3]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials/01-lennard_jones' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials/01-lennard_jones' Making all in 02-charged_system make[3]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials/02-charged_system' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials/02-charged_system' make[3]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials' make[3]: Nothing to be done for `all-am'. make[3]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials' make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc/tutorials' make[2]: Entering directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc' make[1]: Leaving directory `/univ_1/ws1/ws/xmzzhouj-colloid_ac-0/espresso-3.1.0/doc'