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[ESPResSo-users] Thermostat


From: Muhammad Anwar
Subject: [ESPResSo-users] Thermostat
Date: Wed, 6 Apr 2011 14:21:00 +0200
User-agent: Thunderbird 2.0.0.24 (X11/20101027)

Hi,
Dear Users,
I am using Langevin thermostat, and i am trying to set the temperature of the MD simulation 300 K, I entered the thermostat as

thermostat langevin 300 1.0

then to check the temperature
set Temp [expr [analyze energy kinetic]/$n_part/([degrees_of_freedom]/2.0)] // No rotation just translaional dof are included.

puts -nonewline "run $i at time=$time, Temp= $Temp (2.3566e-09), tempe= [setmd temperature] (300.0)"

They both have different values, should not they be same?

Secondly i used temp in KT by putting
set T 300
set kT [expr $T * 1.38e-23/epsilon(kcal/mol)]
thermostat langevin  $kT 1.0
i found following message

Failed upon creating one of the monomers in Espresso!
Aborting...

Can anybody help in setting the temperature? Thank you very much.

Best regards,
Muhammad Anwar





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