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[ESPResSo] parallel computing


From: Mikheil Azatov
Subject: [ESPResSo] parallel computing
Date: Wed, 4 Aug 2010 11:16:29 -0400

Hi,

I'm very new to parallel computing and know very little about it so far. I installed lam 7.1.4 on my computer and tried building espresso (--with-mpi=MPI option) but i got a lot of errors like this: 

maggs.c:(.text+0x190be): undefined reference to `ompi_mpi_comm_world'
maggs.c:(.text+0x190e4): undefined reference to `MPI_Irecv'
maggs.c:(.text+0x19109): undefined reference to `ompi_mpi_comm_world'
maggs.c:(.text+0x1953c): undefined reference to `ompi_mpi_comm_world'
maggs.c:(.text+0x19542): undefined reference to `ompi_mpi_op_sum'
maggs.c:(.text+0x19547): undefined reference to `ompi_mpi_double'
maggs.c:(.text+0x19561): undefined reference to `MPI_Allreduce'
maggs.c:(.text+0x198e8): undefined reference to `ompi_mpi_comm_world'
maggs.c:(.text+0x198ee): undefined reference to `ompi_mpi_op_max'
maggs.c:(.text+0x198f3): undefined reference to `ompi_mpi_double'
maggs.c:(.text+0x1990d): undefined reference to `MPI_Allreduce'
maggs.c:(.text+0x19ca7): undefined reference to `ompi_mpi_comm_world'
maggs.c:(.text+0x19cad): undefined reference to `ompi_mpi_op_sum'
maggs.c:(.text+0x19cb2): undefined reference to `ompi_mpi_double'
maggs.c:(.text+0x19cbc): undefined reference to `MPI_Allreduce'
maggs.o: In function `Maggs_init':
maggs.c:(.text+0x1a3c7): undefined reference to `ompi_mpi_comm_world'
maggs.c:(.text+0x1a3cd): undefined reference to `ompi_mpi_op_sum'
maggs.c:(.text+0x1a3d2): undefined reference to `ompi_mpi_double'
maggs.c:(.text+0x1a3dc): undefined reference to `MPI_Reduce'
maggs.o: In function `prepare_surface_planes':
maggs.c:(.text+0x4915): undefined reference to `MPI_Type_commit'

I also tried installing openmpi but got the same...
I was wondering if anyone could help me to make parallel computing work, or maybe show me the manual of how to do this. Any help would be really appreciated because I don't even know where to start.
I was thinking first to make both CPU's on my computer work together and then try running on several computers.

Thanks a lot,
Mikheil Azatov
University of Maryland


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