[Espressomd-maintainer] Build failed in Jenkins: master-nightly-mpich #386

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-nightly-mpich/386/changes>

Changes:

[Steffen.Hirschmann] Remove unnecessary variable

------------------------------------------
Started by an SCM change
Building remotely on cip23 in workspace 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/>
Restoring workspace from build #804 of project master-fetch-bootstrap
[master-nightly-mpich] $ /bin/bash -xe /tmp/jenkins1739273777571367505.sh
+ export LD_LIBRARY_PATH=/home/jenkins/boost/src/boost_1_61_0/stage/lib/
+ LD_LIBRARY_PATH=/home/jenkins/boost/src/boost_1_61_0/stage/lib/
+ cmake -DMPI_CXX_COMPILER=/home/jenkins/mpich/bin/mpic++ 
-DMPI_C_COMPILER=/home/jenkins/mpich/bin/mpicc 
-DBOOST_INCLUDEDIR=/home/jenkins/boost/src/boost_1_61_0 
-DBOOST_LIBRARYDIR=/home/jenkins/boost/src/boost_1_61_0/stage/lib/
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Config file: 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/core/myconfig-default.hpp>
-- Performing Test result__PRETTY_FUNCTION__
-- Performing Test result__PRETTY_FUNCTION__ - Success
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found PythonInterp: /usr/bin/python (found version "2.7.13") 
-- Found Cython version 0.23
-- Found Cython: /usr/bin/cython (Required is at least version "0.23") 
-- Found NumPy: /usr/lib64/python2.7/site-packages/numpy/core/include (found 
version "1.8.0") 
-- NumPy ver. 1.8.0 found (include: 
/usr/lib64/python2.7/site-packages/numpy/core/include)
-- Found FFTW3: /usr/lib64/libfftw3.so  
-- Found Tclsh: /usr/bin/tclsh (found version "8.6") 
-- Found TCL: /usr/lib64/libtcl8.6.so  
-- Found TCLTK: /usr/lib64/libtcl8.6.so  
-- Found TK: /usr/lib64/libtk8.6.so  
-- Found HDF5: 
/usr/lib64/mpi/gcc/openmpi/lib64/libhdf5.so;/usr/lib64/libpthread.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so
 (found version "1.8.15") 
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") 
-- Checking for module 'scafacos'
--   Found scafacos, version 0.9
-- Boost version: 1.61.0
-- Found the following Boost libraries:
--   mpi
--   serialization
-- Boost version: 1.61.0
-- Found the following Boost libraries:
--   unit_test_framework
-- Found MPI_C: /home/jenkins/mpich/lib64/libmpi.so  
-- Found MPI_CXX: 
/home/jenkins/mpich/lib64/libmpicxx.so;/home/jenkins/mpich/lib64/libmpi.so  
-- Found Doxygen: /usr/bin/doxygen (found version "1.8.11") 
-- writing 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/myconfig-sample.hpp>
-- 
-- The following OPTIONAL packages have been found:

 * PythonInterp
 * FFTW3
 * TCL
 * HDF5
 * PkgConfig
 * Doxygen

-- The following REQUIRED packages have been found:

 * Threads
 * Cython (required version >= 0.23)
 * NumPy
 * Boost
 * MPI

-- Configuring done
-- Generating done
-- Build files have been written to: 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/>
+ make -j4
Scanning dependencies of target myconfig
[  0%] Built target myconfig
Scanning dependencies of target EspressoConfig
[  0%] Generating config-features.hpp, config-features.cpp
Reading definitions from 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/features.def...>
Done.
Writing 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/core/config-features.hpp...>
Done.
Writing 
<http://espressomd.org/jenkins/job/master-nightly-mpich/ws/src/core/config-features.cpp...>
Done.
[  0%] Built target EspressoConfig
[  0%] Building NVCC (Device) object 
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_HarmonicWell_cuda.cu.o
[  0%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_cuda_init_cuda.cu.o
[  0%] Building NVCC (Device) object 
src/core/immersed_boundary/CMakeFiles/ImmersedBoundaryCuda.dir/ImmersedBoundaryCuda_generated_ibm_cuda.cu.o
Scanning dependencies of target Scafacos
[  0%] Building CXX object 
src/core/scafacos/CMakeFiles/Scafacos.dir/Scafacos.cpp.o
[  0%] Linking CXX shared library libScafacos.so
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
cannot find -lpfft
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
cannot find -lmpi_usempif08
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
cannot find -lmpi_usempi_ignore_tkr
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
cannot find -lmpi_mpifh
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
cannot find -lmpi
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
skipping incompatible /usr/lib/../lib/libm.so when searching for -lm
/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld: 
skipping incompatible /usr/lib/../lib/libm.so when searching for -lm
collect2: error: ld returned 1 exit status
src/core/scafacos/CMakeFiles/Scafacos.dir/build.make:94: recipe for target 
'src/core/scafacos/libScafacos.so.4' failed
make[2]: *** [src/core/scafacos/libScafacos.so.4] Error 1
CMakeFiles/Makefile2:2226: recipe for target 
'src/core/scafacos/CMakeFiles/Scafacos.dir/all' failed
make[1]: *** [src/core/scafacos/CMakeFiles/Scafacos.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[  1%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda_device.cu.o
Scanning dependencies of target ImmersedBoundaryCuda
[  2%] Linking CXX shared library libImmersedBoundaryCuda.so
[  2%] Built target ImmersedBoundaryCuda
[  2%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_EspressoSystemInterface_cuda.cu.o
[  2%] Building NVCC (Device) object 
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_Mmm1dgpuForce_cuda.cu.o
[  2%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_matrix.cu.o
[  2%] Building NVCC (Device) object 
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_HarmonicOrientationWell_cuda.cu.o
[  3%] Building NVCC (Device) object 
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_EwaldGPU_cuda.cu.o
[  3%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_fd-electrostatics_cuda.cu.o
[  3%] Building NVCC (Device) object 
src/core/actor/CMakeFiles/ActorCuda.dir/ActorCuda_generated_DipolarDirectSum_cuda.cu.o
[  3%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_p3m_gpu_cuda.cu.o
[  4%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_cuda_common_cuda.cu.o
[  4%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda.cu.o
[  4%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_electrokinetics_cuda.cu.o
Scanning dependencies of target ActorCuda
[  4%] Linking CXX shared library libActorCuda.so
[  4%] Built target ActorCuda
[  4%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda_kernel.cu.o
[  5%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_integrate_sd_cuda_debug.cu.o
[  5%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_p3m_gpu_error_cuda.cu.o
[  5%] Building NVCC (Device) object 
src/core/CMakeFiles/EspressoCuda.dir/EspressoCuda_generated_lbgpu_cuda.cu.o
Scanning dependencies of target EspressoCuda
[  5%] Linking CXX shared library libEspressoCuda.so
[  5%] Built target EspressoCuda
Makefile:138: recipe for target 'all' failed
make: *** [all] Error 2
+ exit 1
Build step 'Execute shell' marked build as failure
Archiving artifacts