[Espressomd-maintainer] Build failed in Jenkins: master-build-check #663

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-build-check/663/changes>

Changes:

[Florian Weik] Fix regressions.

------------------------------------------
[...truncated 208 lines...]
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
****************************************************************
*               Checking for standard functions                *
****************************************************************
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sys/socket.h... (cached) yes
checking types of arguments for select... int,fd_set *,struct timeval *
checking for size_t... yes
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking whether to use FFTW... yes
checking for libfftw3... yes
checking for fftw3.h... yes
checking whether to use CUDA... yes
checking for nvcc... /usr/local/cuda/bin/nvcc
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... no
checking if /usr/local/cuda/bin/nvcc supports -c -o file.o... (cached) no
checking whether the /usr/local/cuda/bin/nvcc linker 
(/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes
checking how to hardcode library paths into programs... immediate
checking for libcudart... yes
checking for libcufft... yes
checking for libcublas... yes
checking for cublas_v2.h... yes
checking for libcurand... yes
checking whether CUDA compiles... yes
checking whether CUDA runs... yes
checking for boostlib >= 1.48... yes
checking whether the Boost::Unit_Test_Framework library is available... yes
checking whether to use MAGMA... guess
checking for library containing magma_init... no
configure: WARNING: MAGMA not found. Some features will not be available!
checking whether to use ARPACK... guess
checking for libarpack... no
configure: WARNING: could not find ARPACK library. Some features will not be 
available!
configure: WARNING: ARPACK not found. Some features will not be available!
****************************************************************
*                  Checking for Python                         *
****************************************************************
checking for a Python interpreter with version >= 2.5... python
checking for python... /usr/bin/python
checking for python version... 2.7
checking for python platform... linux2
checking for python script directory... ${prefix}/lib/python2.7/site-packages
checking for python extension module directory... 
${exec_prefix}/lib64/python2.7/site-packages
checking whether python -B works... yes
checking whether the python interface is wanted... no
****************************************************************
*                  Checking for Tcl/Tk                         *
****************************************************************
checking whether to build the Tcl interface... yes
checking for libtcl8.6... yes
checking for tcl.h... yes
checking whether to use Tk... yes
****************************************************************
*                          h5md                                *
****************************************************************
checking whether to build with h5md support... yes
checking for libhdf5... yes
checking for hdf5.h... yes
****************************************************************
*                   Other settings                             *
****************************************************************
checking whether to use efence... no
checking whether the variable MYCONFIG is set... no
checking the number of available CPUs... 8 
****************************************************************
*                   Creating output files                      *
****************************************************************
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config/Makefile
config.status: creating config/myconfig-sample-header.hpp
config.status: creating src/Makefile
config.status: creating src/core/Makefile
config.status: creating src/tcl/Makefile
config.status: creating src/python/espressomd/Makefile
config.status: creating src/core/unit_tests/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating doc/Makefile
config.status: creating doc/logo/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/doxygen/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/00-building_espresso/Makefile
config.status: creating doc/tutorials/01-lennard_jones/Makefile
config.status: creating doc/tutorials/02-charged_system/Makefile
config.status: creating doc/tutorials/03-object_in_fluid/Makefile
config.status: creating doc/tutorials/04-lattice_boltzmann/Makefile
config.status: creating doc/tutorials/05-raspberry_electrophoresis/Makefile
config.status: creating doc/tutorials/06-active_matter/Makefile
config.status: creating doc/tutorials/07-electrokinetics/Makefile
config.status: creating doc/tutorials/08-visualization/Makefile
config.status: creating doc/latexit.sh
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/python/pypresso
config.status: creating src/acconfig.hpp
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing myconfig-sample.hpp commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-suse-linux-gnu
package version         = 3.4-dev-1931-gc9955ae
development sources     = yes

Compiler
--------
compiler                = mpic++
linker                  = /usr/x86_64-suse-linux/bin/ld -m elf_x86_64
c++ compiler flags      =  -std=c++11
c++ preprocessor flags  =  -I/usr/local/cuda/include
linker flags            =  -L/usr/local/cuda/lib64
libraries               = -lhdf5 -ltcl8.6 -lcurand -lcublas -lcufft -lcudart 
-lfftw3  -lm -ldl
using debug flags       = 
using profiling flags   = 

cython complier         = 
cython preproc flags    = 


Libraries
---------
FFTW                    = yes
efence                  = no
h5md                    = yes
boost_test              = yes

Cuda
----
CUDA compiler           = /usr/local/cuda/bin/nvcc
CUDA flags              =  -O3 -std c++11 --ptxas-options=-v -gencode 
arch=compute_20,code=compute_20

Tcl/Tk
------
Tcl version             = tcl8.6
Tk version              = none

Python
------
python                  = /usr/bin/python -B
build python interface  = 

Other settings
--------------
config                  = myconfig.hpp
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/master-build-check/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /group/icp/texlive/bin/x86_64-linux/pdflatex
makeindex               = /group/icp/texlive/bin/x86_64-linux/makeindex
bibtex                  = /group/icp/texlive/bin/x86_64-linux/bibtex
doxygen                 = /usr/bin/doxygen
dot                     = /usr/bin/dot

Not building Python interface.
****************************************************************
* DEPRECATION WARNING: The autoconf/autotools build system     *
* will be replaced by cmake in the future.                     *
* New features are only available via cmake.                   *
****************************************************************
END CONFIGURE
<http://espressomd.org/jenkins/job/master-build-check/ws/>
+ maintainer/jenkins/build.sh
  srcdir=<http://espressomd.org/jenkins/job/master-build-check/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-build-check/ws/>
  insource=true
START BUILD
  myconfig=maxset
  build_procs=1
<http://espressomd.org/jenkins/job/master-build-check/ws/> 
<http://espressomd.org/jenkins/job/master-build-check/ws/>
Copying maxset.hpp to 
<http://espressomd.org/jenkins/job/master-build-check/ws/myconfig.hpp...>
>make -j 1 
Making all in config
make[1]: Entering directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/config'>
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/config'>
Making all in src
make[1]: Entering directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
make  all-recursive
make[2]: Entering directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
Making all in core
make[3]: Entering directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core'>
  GEN      myconfig-final.hpp <= ../../myconfig.hpp
  GEN      config-features.hpp
make  all-recursive
make[4]: Entering directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core'>
Making all in unit_tests
make[5]: Entering directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core/unit_tests'>
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core/unit_tests'>
make[5]: Entering directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core'>
  CXX      config-features.lo
  CXX      cells.lo
In file included from domain_decomposition.hpp:62:0,
                 from cells.cpp:40:
thermostat.hpp: In function 'void friction_thermo_langevin(Particle*)':
thermostat.hpp:247:3: error: 'langevin_temp_coeff' was not declared in this 
scope
   langevin_temp_coeff = 24.0;
   ^
Makefile:1142: recipe for target 'cells.lo' failed
make[5]: *** [cells.lo] Error 1
make[5]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core'>
Makefile:1167: recipe for target 'all-recursive' failed
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core'>
Makefile:815: recipe for target 'all' failed
make[3]: *** [all] Error 2
make[3]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src/core'>
Makefile:449: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
Makefile:387: recipe for target 'all' failed
make[1]: *** [all] Error 2
make[1]: Leaving directory 
'<http://espressomd.org/jenkins/job/master-build-check/ws/src'>
Makefile:475: recipe for target 'all-recursive' failed
make: *** [all-recursive] Error 1
+ exit 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts