Re: [O] Org and Citations / References / Bibliography

[John Kitchin]

Rainer M Krug writes:

> It does now. I went through the setup process slowly again using the
> README.org and the org-ref.org in
> [[https://github.com/jkitchin/org-ref]] as guidelines and it worked.
>
> But I could not install any of the "useful libraries", as none of them
> seems to be on melpa et al?

These should all be in the org-ref distribution, so if you have that in
your load-path it should work, or add something like   :load-path
"~/.emacs.d/org-ref" to the optional libaries too.

Thanks for sharing your setup. I have not used use-package much, but
yours looks pretty clean!

>
> Thanks a lot - and org-ref looks really great.
>
> Cheers,
>
> Rainer
>
>
> P.S.:
>
> Just for reference: I now have the following in my emacs.org file:
>
> *** org-ref
> See [[https://www.youtube.com/watch?v=JyvpSVl4_dg][org-ref video]] and 
> [[https://github.com/jkitchin/jmax/blob/master/org-ref.org][org-rel github 
> site]] for further details (John Kitchin)
> #+begin_src emacs-lisp
> (use-package ebib
>   :ensure t
>   )
> (use-package dash
>   :ensure t
>   )
> (use-package s
>   :ensure t
>   )
> (use-package f
>   :ensure t
>   )
> (use-package hydra
>   :ensure t
>   )
> (use-package org-ref
>   :ensure f
>   :load-path "~/.emacs.d/org-ref"
>   :config
>   ;; README.org in org-ref repo for the why
>   (setq reftex-default-bibliography 
> '("~/Documents/Mendeley/bibliography.bib"))
>   ;;
>   ;; see org-ref for use of these variables
>   (setq org-ref-bibliography-notes "~/Documents/Mendeley/notes.org"
>         org-ref-default-bibliography 
> '("~/Documents/Mendeley/bibliography.bib")
>         org-ref-pdf-directory "~/iCloud/Mendeley/")
>   ;;
>   (setq helm-bibtex-bibliography "~/.emacs.d/org-ref/test.bib")
>   (setq helm-bibtex-library-path "~/Dropbox/bibliography/bibtex-pdfs")
>   ;;
>   ;; open pdf with system pdf viewer (works on mac)
>   (setq helm-bibtex-pdf-open-function
>         (lambda (fpath)
>           (start-process "open" "*open*" "open" fpath)))
>
>   ;; :bind
>   ;; You may want to set some convenient keys for working in your bibtex file:
>   ;; ("f10" . org-ref-open-bibtex-notes)
>   ;; ("f11" . org-ref-open-bibtex-pdf)
>   ;; ("f12" . org-ref-open-in-browser)
>   )
> ;; optional but very useful libraries in org-ref
> (use-package doi-utils
>   :disabled t
>   :ensure t
>   )
> (use-package jmax-bibtex
>   :disabled t
>   :ensure t
>   )
> (use-package pubmed
>   :disabled t
>   :ensure t
>   )
> (use-package arxiv
>   :disabled t
>   :ensure t
>   )
> (use-package sci-id
>   :disabled t
>   :ensure t
>   )
> #+end_src
>
>>
>> Rainer M Krug writes:
>>
>>> Hi
>>>
>>> I have been following the whole discussion about the implementation of a
>>> good citation system in org, which is really necessary.
>>>
>>> At the moment I am again at that point where I would like to include
>>> citations in a document and I don't get any citation system to work -
>>> neither org-ref[1] nor org's org-reftex-citation nor reftex
>>> citation. None of these find anything in a .bib file, I have no overview
>>> where I have to specify the bib file and I am frustrated, because it
>>> worked some months ago.
>>>
>>> I would very much like to use org-ref, but I don't even get the supplied
>>> examples to work, i.e. find something from the .bib file.
>>>
>>> Any suggestions what I can do, any simple / minimalistic init.el file
>>> which I can merge into my config?
>>>
>>> Thanks,
>>>
>>> Rainer
>>>
>>>
>>> Footnotes:
>>> [1]  
>>> http://kitchingroup.cheme.cmu.edu/blog/2014/05/13/Using-org-ref-for-citations-and-references/
>>
>> --
>> Professor John Kitchin
>> Doherty Hall A207F
>> Department of Chemical Engineering
>> Carnegie Mellon University
>> Pittsburgh, PA 15213
>> 412-268-7803
>> @johnkitchin
>> http://kitchingroup.cheme.cmu.edu

--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu