* Capturing filename
I would like to use (babel) orgmode as an interactive python
notebook. Therefore, in order to allow the various code blocks to
"know" each other, it is important to use the ~:session~
option. However, once ~:session~ is used, together with ~matplotlib~
the desired behavior is no longer in place.
* Clean testing, no Matplotlib
For the sake of testing, the following merely suppose to return the filename
#+BEGIN_SRC python :session no_matplotlib :results file :exports both
x = 'hello '
y = 'world'
z = x + y
'foo.bar'
#+END_SRC
#+RESULTS:
[[file:foo.bar]]
*Passed* Indeed, the ~RESULTS~ block contains a link to the filename
indicated by the last string.
* Importing Matplotlib
The following minimal example should generate a simple figure,
~myfig.png~, and orgmode should capture it and interpret it as a
filename to be used by the following ~RESULTS~ block.
#+BEGIN_SRC python :session with_matplotlib :results file
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
plt.savefig('myfig.png')
'myfig.png'
#+END_SRC
#+RESULTS:
[[file:]]
*Failed!* This time, it doesn't work anymore. The file ~myfig.png~ is
properly generated, but the last string is not captured by
~matplotlib~. Following is the content of the corresponding
interactive python session:
#+BEGIN_SRC
Python 3.4.3 (default, Feb 27 2015, 00:22:26)
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> >>> >>> , '''/var/folders/kz/1c2cxn1x60n_t5p2j1p02b180000gn/T/py27084Z6S''', 'exec'));
import matplotlib
import matplotlib
matplotlib.use('Agg')
>>> matplotlib.use('Agg')
import matplotlib.pyplot as plt
import matplotlib.pyplot as plt
fig=plt.figure(figsize=(3,2))
fig=plt.figure(figsize=(3,2))
plt.plot([1,3,2])
plt.plot([1,3,2])
plt.savefig('myfig.png')
plt.savefig('myfig.png')
'myfig.png'
'myfig.png'
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b180000gn/T/babel-2708423D/python-27084mEZ', 'w').write(str(_))
open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b180000gn/T/babel-2708423D/python-27084mEZ', 'w').write(str(_))
'org_babel_python_eoe'
'org_babel_python_eoe'
>>> >>> >>> >>> [<matplotlib.lines.Line2D object at 0x1071d3860>]
>>> 'myfig.png'
>>> >>> 9
>>> >>> >>> 'org_babel_python_eoe'
>>>
#+END_SRC
* Some background
** Python Version
#+BEGIN_SRC python :session background :results output
import sys
sys.version
#+END_SRC
#+RESULTS:
: import sys
: >>> sys.version
: '3.4.3 (default, Feb 27 2015, 00:22:26) \n[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)]'
: sys.executable
: '/Users/drorata/py-envs/generic3.4/bin/python'
:
:
** System
I am running Emacs version ~GNU Emacs 24.4.51.1 (x86_64-apple-darwin14.1.0, NS apple-appkit-1344.72) of 2015-02-02 on boxname.local~
The orgmode version is: ~Org-mode version 8.2.10 (8.2.10-40-gc763fa-elpaplus @ /Users/username/.emacs.d/elpa/org-plus-contrib-20150504/)~
** Stackoverflow reference
I also posted a question in the SE network:
* Question
So, my question is how to tackle/debug this issue? Can someone give me
a hand here? That would be really great! Thanks!
--