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Re: [O] Selectively export RESULTS
From: |
Matthew Landis |
Subject: |
Re: [O] Selectively export RESULTS |
Date: |
Fri, 2 Mar 2012 17:24:44 +0000 (UTC) |
User-agent: |
Loom/3.14 (http://gmane.org/) |
<cberry <at> tajo.ucsd.edu> writes:
>
> Eric Schulte <eric.schulte <at> gmx.com> writes:
>
> >>> Does this do what you want?
> >
> > Have you looked at the :cache header argument [1], from my understanding
> > of your use case it should be exactly what you are after.
> >
>
> Its a step in the right direction.
>
> It seems I have to set :cache yes on every block I use before I invoke
> it. My attempt to use a buffer-wide PROPERTY setting for cache did not
> pan out.
>
I'd like to put in a vote for the kind of functionality that cberry is
describing. I have a very similar situation - a large org file that uses R to
do a lot of time consuming data manipulation and model fitting, resulting in
statistical tables and graphs. I run a lot of the code blocks as I'm writing
it, resulting in :results in the org file.
In the end, I'd like to export the org file to html or ODT, but I'd like to be
able to choose buffer-wide whether to rerun all of the code blocks or just use
the results that are already in the buffer. I tried setting #+PROPERTY: eval
no
at the top of the buffer in the hopes that on export, it would ignore all my
code blocks and just incorporate the :results, but this was ignored and my code
blocks were rerun.
The cache argument only partially deals with the problem, as this example
illustrates:
#+begin_src R :session :cache yes
x <- rnorm(100)
#+end_src
#+begin_src R :session :results graphics :exports results :file hist.png :cache
yes
hist(x)
#+end_src
Now after the first export, I change code block 2, but not code block 1. If I
understand how cache works correctly, code block 2 will be rerun, but it will
fail because code block 1 is not rerun, so x doesn't exist in the R session.
For this reason, I'd prefer to be able to decide whether to re-run on a file-
wide basis.
Many thanks to all of you who have created such an amazing system.
M
- Re: [O] Selectively export RESULTS,
Matthew Landis <=
- Re: [O] Selectively export RESULTS, Eric Schulte, 2012/03/02
- Re: [O] Selectively export RESULTS, Matthew Landis, 2012/03/02
- Re: [O] Selectively export RESULTS, Eric Schulte, 2012/03/02
- Re: [O] Selectively export RESULTS, Matthew Landis, 2012/03/02
- Re: [O] Selectively export RESULTS, Eric Schulte, 2012/03/02
- Re: [O] Selectively export RESULTS, Sebastien Vauban, 2012/03/03
- Re: [O] Selectively export RESULTS, Achim Gratz, 2012/03/03
- Re: [O] Selectively export RESULTS, Sebastien Vauban, 2012/03/03
- Re: [O] Selectively export RESULTS, Achim Gratz, 2012/03/04
- Re: [O] Selectively export RESULTS, Sebastien Vauban, 2012/03/04