[O] missing todo's in agenda after emacs/org upgrade

[Peter Frings]

Good afternoon all,

I recently switched from the wonderful Carbon-emacs to the `no-frills'
Emacs for OSX, and decided to use the emacs `starter-kit for social
sciences' (http://kjhealy.github.com/emacs-starter-kit/) with it.

During the upgrade, I also upgraded org-mode from 6.6. to 7.7.

Now, the agenda no longers lists my todo items... the agenda files are
the same as the previous setup, the todo keywords are the same, ... I've
examined all plausible customizations, but I can't seem to find the
problem.

The agenda shows the (re)scheduled todo items all right, the Agenda Files 
menu shows the correct files, 

Another thing that’s missing are the logged items in the time grid. The 
repeating 
tasks show up, but the clocked tasks don’t.

This is probably something really stupid that I’m overlooking, but i can’t find 
it. 
Is there someone out there that can point me in the right direction?

Thanks!
Peter.



Emacs  : GNU Emacs 23.3.1 (x86_64-apple-darwin, NS apple-appkit-1038.35)
 of 2011-03-10 on black.porkrind.org
Package: Org-mode version 7.7

current state:
==============
(setq
 org-export-latex-after-initial-vars-hook '(my-auto-tex-parameters 
my-auto-tex-cmd
                                            org-beamer-after-initial-vars)
 org-link-frame-setup '((vm . vm-visit-folder-other-frame) (gnus . 
gnus-other-frame)
                        (file . find-file-other-frame))
 org-export-latex-listings 'minted
 org-agenda-clockreport-parameter-plist '(:link t :maxlevel 3)
 org-speed-command-hook '(org-speed-command-default-hook 
org-babel-speed-command-hook)
 org-agenda-custom-commands '(("p" "Postponed tasks" todo
                               #("POSTPONED" 0 9 (face org-warning)) nil)
                              )
 org-shiftdown-final-hook '(windmove-down)
 org-agenda-files '("~/planning/planning.org" "~/planning/todo.org" 
"~/planning/notes.org"
                    "~/planning/time-sheet.org")
 org-agenda-include-diary t
 org-src-window-setup 'current-window
 org-src-fontify-natively t
 org-babel-load-languages '((emacs-lisp . t) (sh . t) (R . t) (perl . t) (ruby 
. t)
                            (python . t) (js . t) (haskell . t) (clojure . t) 
(ditaa . t))
 org-hide-leading-stars t
 org-completion-use-ido t
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-shiftup-final-hook '(windmove-up)
 org-export-preprocess-after-blockquote-hook 
'(org-special-blocks-make-special-cookies)
 org-after-todo-state-change-hook '(org-clock-out-if-current)
 org-babel-tangle-lang-exts '(("latex" . "tex") ("clojure" . "clj") ("haskell" 
. "hs")
                              ("python" . "py") ("ruby" . "rb") ("perl" . "pl")
                              ("emacs-lisp" . "el"))
 org-clock-history-length 10
 org-archive-location "~/planning/archive.org::From %s"
 org-log-state-notes-insert-after-drawers t
 org-export-html-after-blockquotes-hook 
'(org-special-blocks-convert-html-special-cookies)
 org-export-blocks-postblock-hook '(org-exp-res/src-name-cleanup)
 org-log-note-clock-out t
 org-export-html-style "<link rel=\"stylesheet\" type=\"text/css\" 
href=\"org.css\">"
 org-export-latex-format-toc-function 'org-export-latex-format-toc-default
 org-stuck-projects '("+LEVEL=2/-DONE" ("TODO" "NEXT" "NEXTACTION" "BUSY") nil)
 org-export-latex-after-blockquotes-hook 
'(org-special-blocks-convert-latex-special-cookies)
 org-agenda-time-grid '((daily weekly today) #("----------------" 0 16 
(org-heading t))
                        (900 1000 1100 1230 1400 1500 1600 1730))
 org-src-lang-modes '(("r" . ess-mode) ("ocaml" . tuareg) ("elisp" . emacs-lisp)
                      ("ditaa" . artist) ("asymptote" . asy) ("dot" . 
fundamental)
                      ("sqlite" . sql) ("calc" . fundamental) ("C" . c))
 org-log-done-with-time nil
 org-tab-first-hook '(yas/org-very-safe-expand org-hide-block-toggle-maybe
                      org-src-native-tab-command-maybe 
org-babel-hide-result-toggle-maybe)
 org-src-mode-hook '(org-src-babel-configure-edit-buffer 
org-src-mode-configure-edit-buffer)
 org-confirm-shell-link-function 'yes-or-no-p
 org-mouse-1-follows-link t
 org-export-first-hook '(org-beamer-initialize-open-trackers)
 org-agenda-include-all-todo t
 org-todo-keywords '((sequence "TODO(t)" "BUSY(b)" "WAITING(w)" "|" "DONE(d)" 
"CANCELLED(c)"
                      "POSTPONED(p)")
                     )
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-export-latex-packages-alist '(("" "graphicx" t) ("" "longtable" nil) ("" 
"float"))
 org-default-notes-file "~/planning/notes.org"
 org-directory "~/planning/"
 org-blank-before-new-entry '((heading . t) (plain-list-item))
 org-babel-pre-tangle-hook '(save-buffer)
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
                  org-cycle-show-empty-lines 
org-optimize-window-after-visibility-change)
 org-publish-project-alist '(("org" :base-directory "~/.emacs.d/" 
:publishing-directory
                              "~/Documents/websites/kjhhome/esk/" :auto-sitemap 
t
                              :sitemap-filename "index.org" :sitemap-title
                              "Emacs Starter Kit for the Social Sciences: 
Documentation"
                              :section-numbers t :table-of-contents nil :style
                              "<link rel=\"stylesheet\"\n                 
href=\"http://kieranhealy.org/css/blueprint/org-screen.css\"\n                 
type=\"text/css\"/>")
                             )
 org-export-preprocess-before-normalizing-links-hook 
'(org-remove-file-link-modifiers)
 org-use-speed-commands t
 org-replace-disputed-keys t
 org-mode-hook '(org-mode-reftex-setup
                 #[nil "\300\301\302\303\304$\207"
                   [org-add-hook change-major-mode-hook org-show-block-all 
append local] 5]
                 (lambda nil (local-set-key "\216" (quote 
outline-next-visible-heading))
                  (local-set-key "\220" (quote 
outline-previous-visible-heading))
                  (local-set-key "\225" (quote outline-up-heading))
                  (local-set-key "\227" (quote org-table-copy-region))
                  (local-set-key "\231" (quote org-table-paste-rectangle))
                  (local-set-key "\214" (quote org-table-sort-lines))
                  (local-set-key "\311" (quote org-toggle-iimage-in-org))
                  (make-variable-buffer-local (quote yas/trigger-key))
                  (setq yas/trigger-key [tab])
                  (add-to-list (quote org-tab-first-hook) (quote 
yas/org-very-safe-expand))
                  (define-key yas/keymap [tab] (quote yas/next-field)))
                 #[nil "\300\301\302\303\304$\207"
                   [org-add-hook change-major-mode-hook 
org-babel-show-result-all append local]
                   5]
                 org-babel-result-hide-spec org-babel-hide-all-hashes)
 org-refile-targets '((org-agenda-files :maxlevel . 1))
 org-ctrl-c-ctrl-c-hook '(org-clock-update-time-maybe org-babel-hash-at-point
                          org-babel-execute-safely-maybe)
 org-tab-follows-link t
 org-confirm-elisp-link-function 'y-or-n-p
 org-shiftright-final-hook '(windmove-right)
 org-export-interblocks '((lob org-babel-exp-lob-one-liners)
                          (src org-babel-exp-inline-src-blocks))
 org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
 org-occur-hook '(org-first-headline-recenter)
 org-from-is-user-regexp "\\<Peter Frings\\>"
 org-export-preprocess-before-selecting-backend-code-hook 
'(org-beamer-select-beamer-code)
 org-confirm-babel-evaluate nil
 org-tags-column -80
 org-modules '(org-bbdb org-bibtex org-gnus org-info org-jsinfo org-irc 
org-mac-message
               org-mew org-mhe org-rmail org-vm org-wl)
 org-shiftleft-final-hook '(windmove-left)
 org-remember-templates '(("Case" 99 "* TODO [[case:%^{Case}]] - %?\n  %i"
                           "~/planning/AxReqd.org" "Cases")
                          ("Todo" 116 "* TODO %^{Todo}\n %?%i\n" 
"~/planning/notes.org" "Todo")
                          ("Idea" 105 "* %^{Idea}\n %?%i\n" 
"~/planning/notes.org" "Ideas"))
 org-ellipsis " ✎"
 org-export-html-style-extra "<link rel=\"stylesheet\" 
href=\"http://kieranhealy.org/css/kjh-org-custom.css\"; type=\"text/css\"><link 
rel=\"stylesheet\" href=\"http://kieranhealy.org/css/blueprint/print.css\"; 
type=\"text/css\" media=\"print\"> <!--[if IE]><link rel=\"stylesheet\" 
href=\"http://kieranhealy.org/css/blueprint/ie.css\"; type=\"text/css\" 
media=\"screen,projection\"><![endif]-->"
 org-export-latex-minted-options '(("bgcolor" "bg") ("fontsize" "\\small"))
 org-src-tab-acts-natively t
 org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc
                               org-beamer-auto-fragile-frames
                               org-beamer-place-default-actions-for-lists)
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-export-blocks '((src org-babel-exp-src-block nil)
                     (comment org-export-blocks-format-comment t)
                     (ditaa org-export-blocks-format-ditaa nil)
                     (dot org-export-blocks-format-dot nil))
 )