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[O] Re: [babel] "Marker does not point anywhere" error?


From: Rainer M Krug
Subject: [O] Re: [babel] "Marker does not point anywhere" error?
Date: Fri, 25 Mar 2011 13:56:46 +0100
User-agent: Mozilla/5.0 (X11; U; Linux i686; en-US; rv:1.9.2.15pre) Gecko/20110207 Lightning/1.0b2 Shredder/3.1.9pre

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On 25/03/11 13:50, Jambunathan K wrote:
> 
> Can you do M-x toggle-debug-on-error and copy/paste what comes up in the
> backtrace buffer?

Here it is:


Debugger entered--Lisp error: (error "Marker does not point anywhere")
  ansi-color-apply-on-region(#<marker in no buffer> #<marker at 34 in sh>)
  ansi-color-process-output("")
  run-hook-with-args(ansi-color-process-output "")
  comint-send-input(nil t)
  #[(line) "c\210\301\302\303\"\210\304\305!\207" [line
comint-send-input nil t sleep-for 0.25] 3]("RESULTSDIR=$(cat
<<'BABEL_TABLE'")
  mapc(#[(line) "c\210\301\302\303\"\210\304\305!\207" [line
comint-send-input nil t sleep-for 0.25] 3] ("RESULTSDIR=$(cat
<<'BABEL_TABLE'"
"/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/results/"
"BABEL_TABLE" ")" "ANALYSISDIR=$(cat <<'BABEL_TABLE'"
"/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/" "BABEL_TABLE"
")" "echo" "## Copy scripts" "scpa SA.sh SA.sub SA.R
Analysis_sensitivity.R generateLatinHypercubeScenarios.R
cluster://export/home/rkrug/sim/nsa/SA/" "# scp SA.sub
cluster://export/home/rkrug/sim/nsa/SA/" "# scp SA.R
cluster://export/home/rkrug/sim/nsa/SA/" "## Copy data" "# scp
$ANALYSISDIR/../analysis.db  cluster://export/home/rkrug/sim/nsa/SA/"
"echo `date`" "echo 'org_babel_sh_eoe'"))
  org-babel-sh-evaluate(#<buffer sh> "RESULTSDIR=$(cat
<<'BABEL_TABLE'\n/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/results/\nBABEL_TABLE\n)\nANALYSISDIR=$(cat
<<'BABEL_TABLE'\n/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/\nBABEL_TABLE\n)\necho\n##
Copy scripts\nscpa SA.sh SA.sub SA.R  Analysis_sensitivity.R
generateLatinHypercubeScenarios.R
cluster://export/home/rkrug/sim/nsa/SA/\n# scp SA.sub
cluster://export/home/rkrug/sim/nsa/SA/\n# scp SA.R
cluster://export/home/rkrug/sim/nsa/SA/\n## Copy data\n# scp
$ANALYSISDIR/../analysis.db
cluster://export/home/rkrug/sim/nsa/SA/\necho `date`\n" ("output"
"replace"))
  org-babel-execute:sh("echo\n## Copy scripts\nscpa SA.sh SA.sub SA.R
Analysis_sensitivity.R generateLatinHypercubeScenarios.R
cluster://export/home/rkrug/sim/nsa/SA/\n# scp SA.sub
cluster://export/home/rkrug/sim/nsa/SA/\n# scp SA.R
cluster://export/home/rkrug/sim/nsa/SA/\n## Copy data\n# scp
$ANALYSISDIR/../analysis.db
cluster://export/home/rkrug/sim/nsa/SA/\necho `date`\n" ((:var
RESULTSDIR .
"/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/results/") (:var
ANALYSISDIR . "/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/")
(:colname-names) (:rowname-names) (:result-params "output" "replace")
(:result-type . output) (:comments . "") (:shebang . "#!/bin/bash")
(:cache . "no") (:padline . "") (:noweb . "no") (:tangle . "no")
(:exports . "code") (:results . "output replace") (:session . "sh")
(:padnewline . "yes") (:hlines . "no")))
  org-babel-execute-src-block(nil ("sh" "echo\n## Copy scripts\nscpa
SA.sh SA.sub SA.R  Analysis_sensitivity.R
generateLatinHypercubeScenarios.R
cluster://export/home/rkrug/sim/nsa/SA/\n# scp SA.sub
cluster://export/home/rkrug/sim/nsa/SA/\n# scp SA.R
cluster://export/home/rkrug/sim/nsa/SA/\n## Copy data\n# scp
$ANALYSISDIR/../analysis.db
cluster://export/home/rkrug/sim/nsa/SA/\necho `date`\n" ((:var
RESULTSDIR .
"/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/results/") (:var
ANALYSISDIR . "/home/rkrug/sim/results/nsa/LHCube/nsa.63.up-to-date/")
(:colname-names) (:rowname-names) (:result-params "output" "replace")
(:result-type . output) (:comments . "") (:shebang . "#!/bin/bash")
(:cache . "no") (:padline . "") (:noweb . "no") (:tangle . "no")
(:exports . "code") (:results . "output replace") (:session . "sh")
(:padnewline . "yes") (:hlines . "no")) "" nil 0))
  org-babel-execute-src-block-maybe()
  org-babel-execute-maybe()
  org-babel-execute-safely-maybe()
  run-hook-with-args-until-success(org-babel-execute-safely-maybe)
  org-ctrl-c-ctrl-c(nil)
  call-interactively(org-ctrl-c-ctrl-c nil nil)

and some more info:

current state:
==============
(setq
 org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars)
 org-export-latex-listings t
 org-speed-command-hook '(org-speed-command-default-hook
                          org-babel-speed-command-hook)
 org-src-window-setup 'current-window
 org-src-fontify-natively t
 org-plantuml-jar-path
"/home/rkrug/.emacs.d/org-mode/contrib/scripts/plantuml.jar"
 org-ctrl-k-protect-subtree "ask"
 org-hide-leading-stars t
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-after-todo-state-change-hook '(org-clock-out-if-current)
 org-babel-tangle-lang-exts '(("latex" . "tex") ("emacs-lisp" . "el"))
 org-export-blocks-postblock-hook '(org-exp-res/src-name-cleanup)
 org-export-latex-format-toc-function 'org-export-latex-format-toc-default
 org-tab-first-hook '(org-hide-block-toggle-maybe
                      org-src-native-tab-command-maybe
                      org-babel-hide-result-toggle-maybe)
 org-src-mode-hook '(org-src-babel-configure-edit-buffer
                     org-src-mode-configure-edit-buffer)
 org-confirm-shell-link-function 'y-or-n-p
 org-export-first-hook '(org-beamer-initialize-open-trackers)
 org-startup-indented t
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-export-latex-packages-alist '(("" "color") ("" "listings"))
 org-directory "~/Documents/orgfiles"
 org-babel-pre-tangle-hook '(save-buffer)
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
                  org-cycle-show-empty-lines
                  org-optimize-window-after-visibility-change)
 org-export-preprocess-before-normalizing-links-hook
'(org-remove-file-link-modifiers)
 org-mode-hook '((lambda nil
                  (local-set-key "\357" (quote org-mime-org-buffer-htmlize)))
                 #[nil "\300\301\302\303\304$\207"
                   [org-add-hook change-major-mode-hook org-show-block-all
                    append local]
                   5]
                 #[nil "\300\301\302\303\304$\207"
                   [org-add-hook change-major-mode-hook
                    org-babel-show-result-all append local]
                   5]
                 org-babel-result-hide-spec org-babel-hide-all-hashes)
 org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point
                          org-babel-execute-safely-maybe)
 org-confirm-elisp-link-function 'yes-or-no-p
 org-export-interblocks '((lob org-babel-exp-lob-one-liners)
                          (src org-babel-exp-inline-src-blocks))
 org-occur-hook '(org-first-headline-recenter)
 org-from-is-user-regexp "\\<Rainer M Krug\\>"
 org-export-preprocess-before-selecting-backend-code-hook
'(org-beamer-select-beamer-code)
 org-confirm-babel-evaluate nil
 org-ellipsis "? ? ?"
 org-export-kill-product-buffer-when-displayed t
 org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc
                               org-beamer-auto-fragile-frames
                               org-beamer-place-default-actions-for-lists)
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-export-blocks '((src org-babel-exp-src-block nil)
                     (comment org-export-blocks-format-comment t)
                     (ditaa org-export-blocks-format-ditaa nil)
                     (dot org-export-blocks-format-dot nil))
 )

Rainer

> 
> 
> 
> Rainer M Krug <address@hidden> writes:
> 
>> Hi
>>
>> I have the following code block:
>>
>> #+begin_src sh :session sh
>>   echo
>>   ## Copy scripts
>>   scp SA.sh SA.sub SA.R  Analysis_sensitivity.R
>> generateLatinHypercubeScenarios.R cluster://export/home/rkrug/sim/nsa/SA/
>>   # scp SA.sub cluster://export/home/rkrug/sim/nsa/SA/
>>   # scp SA.R   cluster://export/home/rkrug/sim/nsa/SA/
>>   ## Copy data
>>   # scp $ANALYSISDIR/../analysis.db  cluster://export/home/rkrug/sim/nsa/SA/
>>   echo `date`
>> #+end_src
>>
>> When I put my cursor into the block and want to execute it with C-c c I
>> get usually at the first attempt a "Marker does not point anywhere"
>> error, and when I, without moving the cursor, do C-c c again, the code
>> is executed - it is not a serious problem, but a little bit irritating.
>>
>> Org-mode version 7.5 (release_7.5.113.g9010a)
>> GNU Emacs 23.2.1 (i686-pc-linux-gnu, GTK+ Version 2.20.1)
>>
>> Cheers,
>>
>> Rainer
> 


- -- 
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa

Tel:        +33 - (0)9 53 10 27 44
Cell:       +27 - (0)8 39 47 90 42
Fax (SA):   +27 - (0)8 65 16 27 82
Fax (D) :   +49 - (0)3 21 21 25 22 44
Fax (FR):   +33 - (0)9 58 10 27 44
email:      address@hidden

Skype:      RMkrug
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