--- Begin Message ---
|
Subject: |
[PATCH] gnu: python-scikit-learn-extra: Update to 0.3.0-0f95d8d. |
|
Date: |
Wed, 17 Jan 2024 16:02:19 +0000 |
Includes patch from upstream to fix test error building against recently
updated sklearn to 1.3 as described in
https://github.com/scikit-learn-contrib/scikit-learn-extra/issues/171
* gnu/packages/machine-learning.scm (python-scikit-learn-extra): Update
to 0.3.0-0f95d8d.
Change-Id: Ie5137497484dc18f3815bddb2299bcbd4e11b1e9
---
gnu/packages/machine-learning.scm | 88 ++++++++++++++++---------------
1 file changed, 45 insertions(+), 43 deletions(-)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index 1540018347..5b0445a6b9 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1670,52 +1670,54 @@ (define-public python-scikit-learn
(license license:bsd-3)))
(define-public python-scikit-learn-extra
- (package
- (name "python-scikit-learn-extra")
- (version "0.3.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/scikit-learn-contrib/scikit-learn-extra";)
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0yy6ka94ss88f3r7b6mpjf1l8lnv7aabhsg844pigfj8lfiv0wvl"))))
- (build-system pyproject-build-system)
- (arguments
- (list #:phases
- #~(modify-phases %standard-phases
- (add-after 'build 'build-ext
- (lambda _
- (invoke "python" "setup.py" "build_ext"
- "--inplace")))
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- ;; Restrict OpenBLAS threads to prevent segfaults while
testing!
- (setenv "OPENBLAS_NUM_THREADS" "1")
-
- ;; Some tests require write access to $HOME.
- (setenv "HOME" "/tmp")
-
- ;; Step out of the source directory to avoid interference;
- ;; we want to run the installed code with extensions etc.
- (with-directory-excursion "/tmp"
- (invoke "pytest" "-vv" "--pyargs"
- "sklearn_extra"
- ;; ignore tests that require network
- "-k" "not test_build"))))))))
- (propagated-inputs (list python-numpy python-scikit-learn python-scipy))
- (native-inputs (list python-pytest python-pytest-cov python-cython))
- (home-page "https://github.com/scikit-learn-contrib/scikit-learn-extra";)
- (synopsis "Set of tools for scikit-learn")
- (description
- "This package provides a Python module for machine learning that extends
+ (let* ((commit "0f95d8dda4c69f9de4fb002366041adcb1302f3b")
+ (revision "0"))
+ (package
+ (name "python-scikit-learn-extra")
+ (version (git-version "0.3.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url
"https://github.com/scikit-learn-contrib/scikit-learn-extra";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0a248sff1psfwzmngj465gzyisq20d83nzpwpq2cspxhih51m6j9"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'build 'build-ext
+ (lambda _
+ (invoke "python" "setup.py" "build_ext"
+ "--inplace")))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ ;; Restrict OpenBLAS threads to prevent segfaults while
testing!
+ (setenv "OPENBLAS_NUM_THREADS" "1")
+
+ ;; Some tests require write access to $HOME.
+ (setenv "HOME" "/tmp")
+
+ ;; Step out of the source directory to avoid
interference;
+ ;; we want to run the installed code with extensions
etc.
+ (with-directory-excursion "/tmp"
+ (invoke "pytest" "-vv" "--pyargs"
+ "sklearn_extra"
+ ;; ignore tests that require network
+ "-k" "not test_build"))))))))
+ (propagated-inputs (list python-numpy python-scikit-learn python-scipy))
+ (native-inputs (list python-pytest python-pytest-cov python-cython))
+ (home-page "https://github.com/scikit-learn-contrib/scikit-learn-extra";)
+ (synopsis "Set of tools for scikit-learn")
+ (description
+ "This package provides a Python module for machine learning that extends
scikit-learn. It includes algorithms that are useful but do not satisfy the
scikit-learn inclusion criteria, for instance due to their novelty or lower
citation number.")
- (license license:bsd-3)))
+ (license license:bsd-3))))
(define-public python-thinc
(package
base-commit: 604ff7e28eead3ae8bd5e27136565e619a89e744
--
2.40.1
--- End Message ---