bug#68262: closed ([PATCH] gnu: Add r-escape.)

[GNU bug Tracking System]

Your message dated Wed, 10 Jan 2024 18:49:10 +0100
with message-id <87r0ip5ba1.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-escape.
has caused the debbugs.gnu.org bug report #68262,
regarding [PATCH] gnu: Add r-escape.
to be marked as done.

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-- 
68262: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=68262
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-escape.
>
>
>
>
> Date: 
>
> Fri, 5 Jan 2024 12:39:46 +0000
>
>
>
>
> * gnu/packages/bioconductor.scm (r-escape): New variable.
>
> Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
> ---
>  gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++
>  1 file changed, 39 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index bf38afb762..caee2842a7 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1127,6 +1127,45 @@ (define-public r-ensdb-mmusculus-v79
>  Ensembl.")
>      (license license:artistic2.0)))
>  
> +(define-public r-escape
> +  (package
> +    (name "r-escape")
> +    (version "1.12.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "escape" version))
> +       (sha256
> +        (base32 "0bmin69ax7l5x3a0k9mv183277a0hl4znx02y79v2ilkgqkdm7fn"))))
> +    (properties `((upstream-name . "escape")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-biocparallel
> +                             r-broom
> +                             r-data-table
> +                             r-dplyr
> +                             r-ggplot2
> +                             r-ggridges
> +                             r-gseabase
> +                             r-gsva
> +                             r-matrix
> +                             r-matrixgenerics
> +                             r-msigdbr
> +                             r-patchwork
> +                             r-reshape2
> +                             r-rlang
> +                             r-singlecellexperiment
> +                             r-stringr
> +                             r-summarizedexperiment
> +                             r-ucell))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/escape";)
> +    (synopsis "Single cell analysis platform for enrichment")
> +    (description
> +     "R-escape streamlines gene set enrichment analysis for single-cell RNA 
> sequencing.
> +Using raw count information, Seurat objects, or @code{SingleCellExperiment} 
> format,
> +users can perform and visualize GSEA across individual cells.")
> +    (license license:gpl2)))
> +
>  (define-public r-snplocs-hsapiens-dbsnp144-grch37
>    (package
>      (name "r-snplocs-hsapiens-dbsnp144-grch37")
>
> base-commit: ac69b423865f12310cef5662d9c303aa4b90c869
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-escape.
>
>
>
>
> Date: 
>
> Wed, 10 Jan 2024 18:49:10 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.10.8; emacs 29.1
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---