bug#66918: closed ([PATCH] gnu: Add r-rnbeads.)

[GNU bug Tracking System]

Your message dated Sat, 04 Nov 2023 17:10:49 +0100
with message-id <87bkc9sdm5.fsf@elephly.net>
and subject line Re: [bug#66918] [PATCH] gnu: Add r-rnbeads.
has caused the debbugs.gnu.org bug report #66918,
regarding [PATCH] gnu: Add r-rnbeads.
to be marked as done.

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-- 
66918: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66918
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> --- Begin Message ---
>
>
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> Subject: 
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> [PATCH] gnu: Add r-rnbeads.
>
>
>
>
> Date: 
>
> Fri, 3 Nov 2023 16:11:05 +0100
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>
>
> * gnu/packages/bioconductor.scm (r-rnbeads): New variable.
>
> Change-Id: I78b248a449473fc37ac414295faa6e61269b8625
> ---
>  gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++
>  1 file changed, 36 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index d79236ea26..bb51d389cb 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -7976,6 +7976,42 @@ (define-public r-rhtslib
>  of other R packages who wish to make use of HTSlib.")
>      (license license:lgpl2.0+)))
>  
> +(define-public r-rnbeads
> +  (package
> +    (name "r-rnbeads")
> +    (version "2.20.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "RnBeads" version))
> +       (sha256
> +        (base32 "15z7l4nmpy01xm19717l27nwf3rfsn6wjv211fn2y4ls40mz75qp"))))
> +    (properties `((upstream-name . "RnBeads")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-biocgenerics
> +           r-cluster
> +           r-ff
> +           r-fields
> +           r-genomicranges
> +           r-ggplot2
> +           r-gplots
> +           r-gridextra
> +           r-illuminaio
> +           r-iranges
> +           r-limma
> +           r-mass
> +           r-matrixstats
> +           r-methylumi
> +           r-plyr
> +           r-s4vectors))
> +    (home-page "https://bioconductor.org/packages/RnBeads";)
> +    (synopsis "RnBeads")
> +    (description
> +     "@code{RnBeads} facilitates comprehensive analysis of various types of DNA
> +methylation data at the genome scale.")
> +    (license license:gpl3)))
> +
>  (define-public r-impute
>    (package
>      (name "r-impute")
>
> base-commit: a0a377fdd6c873aeb6340afeddcd23b4ead7657d
> -- 
> 2.41.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#66918] [PATCH] gnu: Add r-rnbeads.
>
>
>
>
> Date: 
>
> Sat, 04 Nov 2023 17:10:49 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.10.7; emacs 29.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-rnbeads): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---