bug#66913: closed ([PATCH] gnu: Add r-miamiplot.)

[GNU bug Tracking System]

Your message dated Fri, 03 Nov 2023 14:10:42 +0100
with message-id <87zfzvrnh5.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-miamiplot.
has caused the debbugs.gnu.org bug report #66913,
regarding [PATCH] gnu: Add r-miamiplot.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
66913: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66913
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-miamiplot.
>
>
>
>
> Date: 
>
> Fri, 3 Nov 2023 13:05:29 +0000
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-miamiplot): New variable.
>
> Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06
> ---
>  gnu/packages/bioinformatics.scm | 34 +++++++++++++++++++++++++++++++++
>  1 file changed, 34 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 3a4bcd093a..e36593fd8e 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -10665,6 +10665,40 @@ (define-public r-scde
>      ;; See https://github.com/hms-dbmi/scde/issues/38
>      (license license:gpl2)))
>  
> +(define-public r-miamiplot
> +  (let ((commit "beede9c5d6431b4d822aa42e064e01baeb5dd4a0")
> +        (revision "1"))
> +    (package
> +      (name "r-miamiplot")
> +      (version (git-version "1.1.0" revision commit))
> +      (source
> +       (origin
> +         (method git-fetch)
> +         (uri (git-reference
> +               (url "https://github.com/juliedwhite/miamiplot";)
> +               (commit commit)))
> +         (file-name (git-file-name name version))
> +         (sha256
> +          (base32 "0wxxk1lk9jbf0imf59qp302ffasvs84idinkvzirs3dw9w3589n9"))))
> +      (properties `((upstream-name . "miamiplot")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-checkmate
> +                               r-dplyr
> +                               r-ggplot2
> +                               r-ggrepel
> +                               r-gridextra
> +                               r-magrittr
> +                               r-rlang))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/juliedwhite/miamiplot";)
> +      (synopsis "Create a ggplot2 miami plot")
> +      (description
> +       "This package generates a Miami plot with centered chromosome labels.
> +The output is a ggplot2 object.  Users can specify which data they
> +want plotted on top vs. bottom , whether to display significance
> +line(s), what colors to give chromosomes, and what points to label.")
> +      (license license:gpl2))))
> +
>  (define-public r-millefy
>    (package
>      (name "r-millefy")
>
> base-commit: 28ebbe2be8829a4767b9789c6353ad5e826d1164
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-miamiplot.
>
>
>
>
> Date: 
>
> Fri, 03 Nov 2023 14:10:42 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.10.7; emacs 29.1
>
>
>
>
> Applied, thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---