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bug#64446: closed ([PATCH] gnu: Add bliss.)


From: GNU bug Tracking System
Subject: bug#64446: closed ([PATCH] gnu: Add bliss.)
Date: Wed, 11 Oct 2023 17:13:01 +0000

Your message dated Wed, 11 Oct 2023 19:11:54 +0200
with message-id <877cntt76t.fsf@gnu.org>
and subject line Re: [bug#64446] [PATCH v2] gnu: Add bliss.
has caused the debbugs.gnu.org bug report #64446,
regarding [PATCH] gnu: Add bliss.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
64446: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=64446
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
--- Begin Message --- Subject: [PATCH] gnu: Add bliss. Date: Mon, 3 Jul 2023 21:21:32 +0000
* gnu/packages/maths.scm (bliss): New variable.
---
The Makefile is rudimentary, so it is easier to call g++ directly.
I did not include GMP, as it is only used to express group sizes exactly.
 gnu/packages/maths.scm | 87 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 87 insertions(+)

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 653e76027a..ff0aa6170b 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -8529,3 +8529,90 @@ (define-public scilab
 optimization, and modeling, simulation of explicit and implicit dynamical
 systems and symbolic manipulations.")
     (license license:cecill)))                    ;CeCILL v2.1
+
+(define-public bliss
+  (package
+    (name "bliss")
+    (version "0.73")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://www.tcs.hut.fi/Software/bliss/bliss-";
+                                  version ".zip"))
+              (sha256
+               (base32
+                "110ggzyn4fpsq3haisv7pzkgfs5x1m7802r4n5cas30l0hlg6yzm"))))
+    (outputs (list "out" "doc"))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:tests? #f ; No tests
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-string-macro
+            (lambda _
+              (substitute* "bliss.cc"
+                (("\"__DATE__\"") "\" __DATE__ \""))))
+          ;; Move headers under the bliss/ prefix
+          (add-after 'unpack 'move-headers
+            (lambda _
+              (substitute* (find-files "." "\\.(h|hh|cc)$")
+                (("#include \"(.*)\"" all path)
+                 (string-append "#include <bliss/" path ">")))
+              (mkdir-p "bliss")
+              (for-each
+               (lambda (file)
+                 (rename-file file
+                              (string-append "bliss/" (basename file))))
+               (find-files "." "\\.(h|hh)$"))))
+          (add-after 'move-headers 'disable-gmp
+            (lambda _
+              (substitute* "bliss/bignum.hh"
+                (("defined\\(BLISS_USE_GMP\\)") "0"))))
+          (delete 'configure)
+          (replace 'build
+            (lambda _
+              (let ((source-files
+                     '("defs" "graph" "partition" "orbit" "uintseqhash" "heap"
+                       "timer" "utils")))
+                (for-each
+                 (lambda (file)
+                   (display (string-append "Compiling " file "\n"))
+                   (invoke "g++" "-I." "-fPIC" "-c" "-o"
+                           (string-append file ".o")
+                           (string-append file ".cc")))
+                 source-files)
+                (let ((object-files
+                       (map (lambda (file) (string-append file ".o"))
+                            source-files)))
+                  (display (string-append "Linking shared library\n"))
+                  (apply invoke "g++" "-I." "-fPIC" "-shared"
+                         "-o" "libbliss.so"
+                         "bliss_C.cc"
+                         object-files)
+                  (display (string-append "Building bliss\n"))
+                  (apply invoke "g++" "-I." "-o" "bliss.out" "bliss.cc"
+                         "-L." "-lbliss"
+                         (string-append "-Wl,-rpath=" #$output:out "/lib")
+                         object-files)))))
+          (add-after 'build 'build-doc
+            (lambda _
+              (substitute* "Doxyfile"
+                (("INPUT *=.*") "INPUT = . bliss\n"))
+              (invoke "doxygen")))
+          (replace 'install
+            (lambda _
+              (install-file "libbliss.so" (string-append #$output:out "/lib"))
+              (mkdir-p (string-append #$output:out "/bin/"))
+              (copy-file "bliss.out" (string-append #$output:out "/bin/bliss"))
+              (copy-recursively "bliss"
+                                (string-append #$output:out "/include/bliss"))
+              (copy-recursively
+               "html" (string-append #$output:doc "/share/doc/"
+                                     #$name "-" #$version "/html")))))))
+    (native-inputs (list doxygen unzip))
+    (home-page "http://www.tcs.hut.fi/Software/bliss/index.shtml";)
+    (synopsis "Tool for computing automorphism groups and canonical labelings 
of graphs")
+    (description "@code{bliss} is a library for computing automorphism groups
+and canonical forms of graphs.  It has both a command line user interface as
+well as C++ and C programming language APIs.")
+    (license license:lgpl3)))
-- 
2.40.1




--- End Message ---
--- Begin Message --- Subject: Re: [bug#64446] [PATCH v2] gnu: Add bliss. Date: Wed, 11 Oct 2023 19:11:54 +0200 User-agent: Gnus/5.13 (Gnus v5.13)
Hi,

David Elsing <david.elsing@posteo.net> skribis:

> * gnu/packages/maths.scm (bliss): New variable.

I believe this version addresses the concerns Andreas raised.  Applied!

Ludo’.


--- End Message ---

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