bug#46830: closed ([PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm (hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0)

[GNU bug Tracking System]

Your message dated Wed, 13 Sep 2023 11:29:22 +0200
with message-id <ZQGA8vG5Jeaz9OeE@jurong>
and subject line Closing
has caused the debbugs.gnu.org bug report #46830,
regarding [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm 
(hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0
to be marked as done.

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-- 
46830: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=46830
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm (hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0
>
>
>
>
> Date: 
>
> Sun, 28 Feb 2021 07:33:14 -0600
>
>
>
>
> ---
>  gnu/packages/maths.scm | 34 +++++++++++++++++++++++++++++++++-
>  1 file changed, 33 insertions(+), 1 deletion(-)
>
> diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
> index 58433d4b0c..df101635ab 100644
> --- a/gnu/packages/maths.scm
> +++ b/gnu/packages/maths.scm
> @@ -1451,7 +1451,7 @@ Swath).")
>      (license (license:non-copyleft home-page))))
>  
>  (define-public hdf5-parallel-openmpi
> -  (package/inherit hdf5-1.10                      ;use the latest
> +  (package/inherit hdf5-1.10
>      (name "hdf5-parallel-openmpi")
>      (inputs
>       `(("mpi" ,openmpi)
> @@ -1482,6 +1482,38 @@ Swath).")
>                 #t))))))
>      (synopsis "Management suite for data with parallel IO support")))
>  
> +(define-public hdf5-1.12-parallel-openmpi
> +  (package/inherit hdf5-1.12
> +    (name "hdf5-1.12-parallel-openmpi")
> +    (inputs
> +     `(("mpi" ,openmpi)
> +       ,@(package-inputs hdf5)))
> +    (arguments
> +     (substitute-keyword-arguments (package-arguments hdf5)
> +       ((#:configure-flags flags)
> +        ``("--enable-parallel"
> +           ,@(delete "--enable-cxx"
> +                     (delete "--enable-threadsafe" ,flags))))
> +       ((#:phases phases)
> +        `(modify-phases ,phases
> +           (add-after 'build 'mpi-setup
> +             ,%openmpi-setup)
> +           (add-before 'check 'patch-tests
> +             (lambda _
> +               ;; OpenMPI's mpirun will exit with non-zero status if it
> +               ;; detects an "abnormal termination", i.e. any process not
> +               ;; calling MPI_Finalize().  Since the test is explicitly
> +               ;; avoiding MPI_Finalize so as not to have at_exit and thus
> +               ;; H5C_flush_cache from being called, mpirun will always
> +               ;; complain, so turn this test off.
> +               (substitute* "testpar/Makefile"
> +                 (("(^TEST_PROG_PARA.*)t_pflush1(.*)" front back)
> +                  (string-append front back "\n")))
> +               (substitute* "tools/test/h5diff/testph5diff.sh"
> +                 (("/bin/sh") (which "sh")))
> +               #t))))))
> +    (synopsis "Management suite for data with parallel IO support")))
> +
>  (define-public hdf5-blosc
>    (package
>      (name "hdf5-blosc")
> -- 
> 2.30.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Closing
>
>
>
>
> Date: 
>
> Wed, 13 Sep 2023 11:29:22 +0200
>
>
>
>
> Hello,
>
> thanks for your patch, that I only see just now (teams were not yet a thing
> in 2021...). This version of hdf5 has been retired, so I am closing this issue.
> It might be useful to add a parallel package to hdf5@1.14 instead.
>
> Andreas
>
>
>
> --- End Message ---