bug#63447: closed ([PATCH] gnu: Add r-dropletutils.)

[GNU bug Tracking System]

Your message dated Fri, 12 May 2023 09:36:47 +0200
with message-id <87o7mqt2zq.fsf@elephly.net>
and subject line Re: [bug#63447] [PATCH] gnu: Add r-dropletutils.
has caused the debbugs.gnu.org bug report #63447,
regarding [PATCH] gnu: Add r-dropletutils.
to be marked as done.

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-- 
63447: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=63447
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-dropletutils.
>
>
>
>
> Date: 
>
> Thu, 11 May 2023 18:30:16 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-dropletutils): New variable.
> ---
>  gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
>  1 file changed, 44 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index cb441655eb..b54585e97f 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -4897,6 +4897,50 @@ (define-public r-drimseq
>  results.")
>      (license license:gpl3+)))
>  
> +(define-public r-dropletutils
> +  (package
> +    (name "r-dropletutils")
> +    (version "1.20.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "DropletUtils" version))
> +       (sha256
> +        (base32 "09xwfb4ihpsp465vb1zbcwm6ww6qi3spn9d8p4i1gczyc0p9pf1y"))))
> +    (properties `((upstream-name . "DropletUtils")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-beachmat
> +           r-bh
> +           r-biocgenerics
> +           r-biocparallel
> +           r-delayedarray
> +           r-delayedmatrixstats
> +           r-dqrng
> +           r-edger
> +           r-genomicranges
> +           r-hdf5array
> +           r-iranges
> +           r-matrix
> +           r-r-utils
> +           r-rcpp
> +           r-rhdf5
> +           r-rhdf5lib
> +           r-s4vectors
> +           r-scuttle
> +           r-singlecellexperiment
> +           r-summarizedexperiment))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/DropletUtils";)
> +    (synopsis "Utilities for handling single-cell droplet data")
> +    (description
> +     "This package provides a number of utility functions for handling
> +single-cell (RNA-seq) data from droplet technologies such as 10X Genomics.
> +This includes data loading from count matrices or molecule information files,
> +identification of cells from empty droplets, removal of barcode-swapped pseudo-
> +cells, and downsampling of the count matrix.")
> +    (license license:gpl3)))
> +
>  (define-public r-dss
>    (package
>      (name "r-dss")
>
> base-commit: e2eb43f945fd467e9b55a4b3c91cd186cf32e268
> -- 
> 2.39.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#63447] [PATCH] gnu: Add r-dropletutils.
>
>
>
>
> Date: 
>
> Fri, 12 May 2023 09:36:47 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.10.2; emacs 28.2
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-dropletutils): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---