bug#62187: closed ([PATCH 1/2] gnu: Add r-premessa.)

[GNU bug Tracking System]

Your message dated Tue, 14 Mar 2023 19:13:18 +0100
with message-id <875yb342wc.fsf@elephly.net>
and subject line [PATCH 1/2] gnu: Add r-premessa.
has caused the debbugs.gnu.org bug report #62187,
regarding [PATCH 1/2] gnu: Add r-premessa.
to be marked as done.

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-- 
62187: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=62187
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add r-premessa.
>
>
>
>
> Date: 
>
> Tue, 14 Mar 2023 15:01:29 +0000
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-premessa): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 37 +++++++++++++++++++++++++++++++++
>  1 file changed, 37 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 06f9eb8ee3..7025ccd93d 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -8803,6 +8803,43 @@ (define-public r-pando
>  regions for each transcription factor.")
>      (license license:expat)))
>  
> +(define-public r-premessa
> +  (let ((commit "68b42bb984637d0f3ad6a0ecc83e9278994afc85")
> +        (revision "1"))
> +    (package
> +      (name "r-premessa")
> +      (version (git-version "0.3.4" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/ParkerICI/premessa";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "1l0q431zk0lvg22130nx84gdqi7cpl05yah4am63lbx6m4c769pb"))))
> +      (properties `((upstream-name . "premessa")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-data-table
> +                               r-flowcore
> +                               r-ggplot2
> +                               r-gridextra
> +                               r-hexbin
> +                               r-jsonlite
> +                               r-reshape
> +                               r-rhandsontable
> +                               r-shiny
> +                               r-shinyjqui))
> +      (native-inputs (list esbuild))
> +      (home-page "https://github.com/ParkerICI/premessa";)
> +      (synopsis
> +       "This package is for pre-processing of flow and mass cytometry data")
> +      (description
> +       "This is an R package for pre-processing of flow and mass cytometry 
> data.
> +This package includes panel editing or renaming for FCS files, bead-based
> +normalization and debarcoding.")
> +      (license license:gpl3))))
> +
>  (define-public r-presto
>    (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
>          (revision "0"))
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add r-premessa.
>
>
>
>
> Date: 
>
> Tue, 14 Mar 2023 19:13:18 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Pushed with commit 204c51cac44809dc352c86bb33332fc75e2b0056.
> I had to replace the bundled d3.min.js with a variant built from source.
>
> Note that this is why the importer added esbuild (a JS compiler/bundler)
> to the native inputs.
>
> -- 
> Ricardo
>
>
> --- End Message ---