bug#61382: closed ([PATCH 1/2] gnu: Add python-scrublet.)

[GNU bug Tracking System]

Your message dated Thu, 09 Feb 2023 09:38:59 +0100
with message-id <871qmz5j1w.fsf@elephly.net>
and subject line [PATCH 1/2] gnu: Add python-scrublet.
has caused the debbugs.gnu.org bug report #61382,
regarding [PATCH 1/2] gnu: Add python-scrublet.
to be marked as done.

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-- 
61382: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61382
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add python-scrublet.
>
>
>
>
> Date: 
>
> Thu, 9 Feb 2023 09:12:34 +0100
>
>
>
>
> * gnu/packages/bioinformatics.scm (python-scrublet): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
>  1 file changed, 26 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 969b978054..05a078b0b0 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -3459,6 +3459,32 @@ (define-public python-scikit-bio
>  resources for bioinformatics.")
>      (license license:bsd-3)))
>  
> +(define-public python-scrublet
> +  (package
> +    (name "python-scrublet")
> +    (version "0.2.3")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (pypi-uri "scrublet" version))
> +              (sha256
> +               (base32
> +                "0fk5pwk12yz9wpvwkl6j2l2g28f3x35b9r9n5bw6f0i9f0qgd191"))))
> +    (build-system python-build-system)
> +    (propagated-inputs (list python-annoy
> +                             python-cython
> +                             python-matplotlib
> +                             python-numba
> +                             python-numpy
> +                             python-pandas
> +                             python-scikit-image
> +                             python-scikit-learn
> +                             python-scipy
> +                             python-umap-learn))
> +    (home-page "https://github.com/swolock/scrublet";)
> +    (synopsis "single-cell tool to indentify and remove doublets")
> +    (description "Tool for identifying and removing doublets in single-cell 
> RNA-seq data.")
> +    (license license:expat)))
> +
>  (define-public cwltool
>    (package
>      (name "cwltool")
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add python-scrublet.
>
>
>
>
> Date: 
>
> Thu, 09 Feb 2023 09:38:59 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Applied with minor changes.  Thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---