bug#56022: closed ([PATCH] gnu: Add r-alevinqc.)

[GNU bug Tracking System]

Your message dated Thu, 24 Nov 2022 15:31:18 +0100
with message-id <87cz9co22d.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-alevinqc.
has caused the debbugs.gnu.org bug report #56022,
regarding [PATCH] gnu: Add r-alevinqc.
to be marked as done.

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-- 
56022: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56022
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-alevinqc.
>
>
>
>
> Date: 
>
> Thu, 16 Jun 2022 18:16:50 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-alevinqc): New variable.
> ---
>  gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
>  1 file changed, 34 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..f5057ff362 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1987,6 +1987,40 @@ (define-public r-agimicrorna
>  objects are used so that other packages could be used as well.")
>      (license license:gpl3)))
>  
> +(define-public r-alevinqc
> +  (package
> +    (name "r-alevinqc")
> +    (version "1.12.1")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "alevinQC" version))
> +              (sha256
> +               (base32
> +                "0g75qnz7ah0widdjn99lhvnacz38vgl9j86n65wyswsf413hz3bb"))))
> +    (properties `((upstream-name . "alevinQC")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-cowplot
> +           r-dplyr
> +           r-dt
> +           r-ggally
> +           r-ggplot2
> +           r-rcpp
> +           r-rjson
> +           r-rlang
> +           r-rmarkdown
> +           r-shiny
> +           r-shinydashboard
> +           r-tximport))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://github.com/csoneson/alevinQC";)
> +    (synopsis "Quality control reports for @code{Alevin} output")
> +    (description
> +     "The package @code{r-alevinqc} generates quality control reports 
> summarizing
> +the output from an @code{alevin} run.  The reports can be generated as html or
> +pdf files, or as shiny applications.")
> +    (license license:expat)))
> +
>  (define-public r-aneufinder
>    (package
>      (name "r-aneufinder")
>
> base-commit: ef2d908e22f9d4f4a89782766b67d425935ae4eb
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-alevinqc.
>
>
>
>
> Date: 
>
> Thu, 24 Nov 2022 15:31:18 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied and updated, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---