bug#56147: closed ([PATCH] gnu: Add r-aspli.)

[GNU bug Tracking System]

Your message dated Mon, 31 Oct 2022 21:42:12 +0100
with message-id <871qqnd8sv.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-aspli.
has caused the debbugs.gnu.org bug report #56147,
regarding [PATCH] gnu: Add r-aspli.
to be marked as done.

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-- 
56147: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56147
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-aspli.
>
>
>
>
> Date: 
>
> Wed, 22 Jun 2022 16:46:12 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-aspli): New variable.
> ---
>  gnu/packages/bioconductor.scm | 48 +++++++++++++++++++++++++++++++++++
>  1 file changed, 48 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..0136d268b3 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,54 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-aspli
> +  (package
> +    (name "r-aspli")
> +    (version "2.6.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "ASpli" version))
> +              (sha256
> +               (base32
> +                "1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz"))))
> +    (properties `((upstream-name . "ASpli")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-annotationdbi
> +           r-biocgenerics
> +           r-biocstyle
> +           r-data-table
> +           r-dt
> +           r-edger
> +           r-genomicalignments
> +           r-genomicfeatures
> +           r-genomicranges
> +           r-gviz
> +           r-htmltools
> +           r-igraph
> +           r-iranges
> +           r-limma
> +           r-mass
> +           r-pbmcapply
> +           r-rsamtools
> +           r-s4vectors
> +           r-tidyr
> +           r-upsetr))
> +    (home-page "https://bioconductor.org/packages/ASpli";)
> +    (synopsis "Analysis of alternative splicing using RNA-Seq")
> +    (description
> +     "@dfn{AS} (alternative splicing) is a common mechanism of 
> post-transcriptional
> +gene regulation in eukaryotic organisms that expands the functional and 
> regulatory
> +diversity of a single gene by generating multiple mRNA isoforms that encode
> +structurally and functionally distinct proteins.  @code{ASpli} is an 
> integrative
> +pipeline and user-friendly @code{R} package that facilitates the analysis of 
> changes
> +in both annotated and novel AS events.  @code{ASpli} integrates several 
> independent
> +signals in order to deal with the complexity that might arise in splicing
> +patterns.")
> +    ;;   The authors didn't specify any GPL version in description or in the
> +    ;; sources.
> +    (license (list license:gpl2+ license:gpl3+))))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-aspli.
>
>
>
>
> Date: 
>
> Mon, 31 Oct 2022 21:42:12 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---