bug#56163: closed ([PATCH] gnu: Add r-atsnp.)

[GNU bug Tracking System]

Your message dated Mon, 31 Oct 2022 21:40:12 +0100
with message-id <87iljzd8vw.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-atsnp.
has caused the debbugs.gnu.org bug report #56163,
regarding [PATCH] gnu: Add r-atsnp.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
56163: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56163
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-atsnp.
>
>
>
>
> Date: 
>
> Thu, 23 Jun 2022 12:46:31 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-atsnp): New variable.
> ---
>  gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
>  1 file changed, 33 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..f4c5f6e17b 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,39 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-atsnp
> +  (package
> +    (name "r-atsnp")
> +    (version "1.12.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "atSNP" version))
> +              (sha256
> +               (base32
> +                "0dmv34xqwr3l2rznapxmyrkyf1w78qzxdv88s5nn8s1m8qdkgwkz"))))
> +    (properties `((upstream-name . "atSNP")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-biocfilecache
> +           r-biocparallel
> +           r-bsgenome
> +           r-data-table
> +           r-ggplot2
> +           r-lifecycle
> +           r-motifstack
> +           r-rappdirs
> +           r-rcpp
> +           r-testthat))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://github.com/sunyoungshin/atSNP";)
> +    (synopsis
> +     "Affinity test for identifying regulatory single nucleotide 
> polymorphisms")
> +    (description
> +     "The @code{atSNP} package performs affinity tests of motif matches with 
> the
> +@dfn{SNP} (single nucleotide polymorphism) or the reference genomes and SNP-led
> +changes in motif matches.")
> +    (license license:gpl2)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: e74fa406e1043547242a8b67ab9907fea7aae6b9
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-atsnp.
>
>
>
>
> Date: 
>
> Mon, 31 Oct 2022 21:40:12 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---