bug#55240: closed ([PATCH 4/4] gnu: Add r-airpart.)

[GNU bug Tracking System]

Your message dated Mon, 31 Oct 2022 20:10:36 +0100
with message-id <87cza7erlw.fsf@elephly.net>
and subject line [PATCH 1/4] gnu: Add r-forestplot.
has caused the debbugs.gnu.org bug report #55239,
regarding [PATCH 4/4] gnu: Add r-airpart.
to be marked as done.

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-- 
55239: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=55239
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 4/4] gnu: Add r-airpart.
>
>
>
>
> Date: 
>
> Tue, 3 May 2022 08:53:11 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-airpart): New variable.
> ---
>  gnu/packages/bioconductor.scm | 46 +++++++++++++++++++++++++++++++++++
>  1 file changed, 46 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index a78903becc..2967c5016b 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1877,6 +1877,52 @@ (define-public r-agilp
>      ;; GPLv3.
>      (license license:gpl3)))
>  
> +(define-public r-airpart
> +  (package
> +    (name "r-airpart")
> +    (version "1.4.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "airpart" version))
> +              (sha256
> +               (base32
> +                "0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"))))
> +    (properties `((upstream-name . "airpart")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-apeglm
> +           r-clue
> +           r-complexheatmap
> +           r-dplyr
> +           r-dynamictreecut
> +           r-emdbook
> +           r-forestplot
> +           r-ggplot2
> +           r-lpsolve
> +           r-matrixstats
> +           r-mclust
> +           r-pbapply
> +           r-plyr
> +           r-rcolorbrewer
> +           r-rlang
> +           r-s4vectors
> +           r-scater
> +           r-singlecellexperiment
> +           r-smurf
> +           r-summarizedexperiment))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/airpart";)
> +    (synopsis "Differential cell-type-specific allelic imbalance")
> +    (description
> +     "The @code{airpart} package identifies sets of genes displaying 
> differential
> +cell-type-specific allelic imbalance across cell types or states, utilizing
> +single-cell allelic counts.  It makes use of a generalized fused lasso with
> +binomial observations of allelic counts to partition cell types by their 
> allelic
> +imbalance.  Alternatively, a nonparametric method for partitioning cell types
> +is offered.  The package includes a number of visualizations and quality 
> control
> +functions for examining single cell allelic imbalance datasets.")
> +    (license license:gpl2)))
> +
>  (define-public r-aneufinder
>    (package
>      (name "r-aneufinder")
> -- 
> 2.36.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/4] gnu: Add r-forestplot.
>
>
>
>
> Date: 
>
> Mon, 31 Oct 2022 20:10:36 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---