bug#56265: closed ([PATCH] gnu: Add r-bac.)

[GNU bug Tracking System]

Your message dated Thu, 27 Oct 2022 15:44:55 +0200
with message-id <87r0ytgz2u.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-bac.
has caused the debbugs.gnu.org bug report #56265,
regarding [PATCH] gnu: Add r-bac.
to be marked as done.

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56265: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56265
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-bac.
>
>
>
>
> Date: 
>
> Mon, 27 Jun 2022 23:16:20 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-bac): New variable.
> ---
>  gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
>  1 file changed, 24 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..1e86f02128 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,30 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-bac
> +  (package
> +    (name "r-bac")
> +    (version "1.56.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "BAC" version))
> +              (sha256
> +               (base32
> +                "0dkw7438d2sf6nb577dnzija54qs0nhlr47lb73li60fhlnvqmh2"))))
> +    (properties `((upstream-name . "BAC")))
> +    (build-system r-build-system)
> +    (home-page "https://bioconductor.org/packages/BAC";)
> +    (synopsis "Bayesian analysis of Chip-chip experiment")
> +    (description
> +     "This package uses a Bayesian hierarchical model to detect enriched 
> regions
> +from ChIP-chip experiments.  The common goal in analyzing this ChIP-chip data 
> is
> +to detect DNA-protein interactions from ChIP-chip experiments.  The @code{BAC}
> +package has mainly been tested with @code{Affymetrix} tiling array data.  
> However,
> +we expect it to work with other platforms (e.g. Agilent, Nimblegen, cDNA, 
> etc.).
> +Note that @code{BAC} does not deal with normalization, so you will have to
> +normalize your data before hands.")
> +    (license license:artistic2.0)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-bac.
>
>
>
>
> Date: 
>
> Thu, 27 Oct 2022 15:44:55 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied with minor changes.  Thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---