bug#56280: closed ([PATCH] gnu: Add r-basespacer.)

[GNU bug Tracking System]

Your message dated Thu, 27 Oct 2022 15:42:50 +0200
with message-id <87v8o5gz6b.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-basespacer.
has caused the debbugs.gnu.org bug report #56280,
regarding [PATCH] gnu: Add r-basespacer.
to be marked as done.

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-- 
56280: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56280
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-basespacer.
>
>
>
>
> Date: 
>
> Tue, 28 Jun 2022 17:13:54 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-basespacer): New variable.
> ---
>  gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
>  1 file changed, 23 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..51aae2a0f7 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,29 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-basespacer
> +  (package
> +    (name "r-basespacer")
> +    (version "1.40.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "BaseSpaceR" version))
> +              (sha256
> +               (base32
> +                "0jyw4pnybsd6ywpaamk5ywkrcib2z48farsnszmwq97zlbmra7fj"))))
> +    (properties `((upstream-name . "BaseSpaceR")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-rcurl r-rjsonio))
> +    (home-page "https://bioconductor.org/packages/BaseSpaceR";)
> +    (synopsis "R SDK for BaseSpace RESTful API")
> +    (description
> +     "This package provides a @code{R} interface to Illumina's BaseSpace cloud
> +computing environment, enabling the fast development of data analysis and
> +visualisation tools.  Besides providing an easy to use set of tools for
> +manipulating the data from BaseSpace, it also facilitates the access to R's
> +rich environment of statistical and data analysis open source tools.")
> +    (license license:asl2.0)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-basespacer.
>
>
>
>
> Date: 
>
> Thu, 27 Oct 2022 15:42:50 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied with minor changes.  Thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---