bug#58511: closed ([PATCH] gnu: Add r-tximportdata. X-Debbugs-Cc: address@hidden)

[GNU bug Tracking System]

Your message dated Thu, 27 Oct 2022 15:24:10 +0200
with message-id <87bkpxielk.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-tximportdata.
has caused the debbugs.gnu.org bug report #58511,
regarding [PATCH] gnu: Add r-tximportdata. X-Debbugs-Cc: rekado@elephly.net
to be marked as done.

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-- 
58511: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=58511
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-tximportdata. X-Debbugs-Cc: address@hidden
>
>
>
>
> Date: 
>
> Fri, 14 Oct 2022 13:12:16 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-tximportdata): New variable.
> ---
>  gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
>  1 file changed, 24 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index ecb60f2e24..bfb773672b 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1605,6 +1605,30 @@ (define-public r-tcgabiolinksgui-data
>  TCGAbiolinksGUI package.")
>      (license license:gpl3)))
>  
> +(define-public r-tximportdata
> +  (package
> +    (name "r-tximportdata")
> +    (version "1.24.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "tximportData" version
> +                                     'experiment))
> +              (sha256
> +               (base32
> +                "0mgbwpybg2xd6x1ijrflmjh5w63qz6ylnzszbbyp437n618m7riy"))))
> +    (properties `((upstream-name . "tximportData")))
> +    (build-system r-build-system)
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/tximportData";)
> +    (synopsis "Data for the tximport package")
> +    (description
> +     "This package provides the output of running various transcript abundance
> +quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project.  The
> +quantifiers were @code{Cufflinks}, @code{RSEM}, @code{kallisto}, @code{Salmon}
> +and @code{Sailfish}.  @code{alevin} example output is also included.")
> +    (license license:gpl2+)))
> +
> +
>  
>  ;;; Packages
>  
>
> base-commit: 10d429f2fce321d8285684503094694ec3979865
> -- 
> 2.37.3
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-tximportdata.
>
>
>
>
> Date: 
>
> Thu, 27 Oct 2022 15:24:10 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied with minor changes to the description.  Thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---