bug#58523: closed ([PATCH] gnu: Add r-macrophage.)

[GNU bug Tracking System]

Your message dated Sat, 15 Oct 2022 23:23:07 +0200
with message-id <875ygkg4s2.fsf@elephly.net>
and subject line Re: [bug#58523] [PATCH] gnu: Add r-macrophage.
has caused the debbugs.gnu.org bug report #58523,
regarding [PATCH] gnu: Add r-macrophage.
to be marked as done.

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-- 
58523: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=58523
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-macrophage.
>
>
>
>
> Date: 
>
> Fri, 14 Oct 2022 19:27:28 +0200
>
>
>
>
> X-Debbugs-Cc: rekado@elephly.net
>
> * gnu/packages/bioconductor.scm (r-macrophage): New variable.
> ---
>  gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
>  1 file changed, 23 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index ecb60f2e24..3692bb94af 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1384,6 +1384,29 @@ (define-public r-genomationdata
>  downloaded from Encode.")
>      (license license:gpl3+)))
>  
> +(define-public r-macrophage
> +  (package
> +    (name "r-macrophage")
> +    (version "1.12.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "macrophage" version
> +                                     'experiment))
> +              (sha256
> +               (base32
> +                "0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms"))))
> +    (properties `((upstream-name . "macrophage")))
> +    (build-system r-build-system)
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/macrophage";)
> +    (synopsis "Human macrophage immune response data")
> +    (description
> +     "This package provides the output of running @code{Salmon} on a set of 24
> +RNA-seq samples from Alasoo, et al. \"Shared genetic effects on chromatin and
> +gene expression indicate a role for enhancer priming in immune response\", 
> published
> +in Nature Genetics, January 2018.")
> +    (license license:gpl2+)))
> +
>  (define-public r-msdata
>    (package
>      (name "r-msdata")
>
> base-commit: 10d429f2fce321d8285684503094694ec3979865
> -- 
> 2.37.3
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#58523] [PATCH] gnu: Add r-macrophage.
>
>
>
>
> Date: 
>
> Sat, 15 Oct 2022 23:23:07 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > X-Debbugs-Cc: rekado@elephly.net
> >
> > * gnu/packages/bioconductor.scm (r-macrophage): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---