bug#55144: closed ([PATCH] gnu: Add r-affyrnadegradation.)

[GNU bug Tracking System]

Your message dated Wed, 27 Apr 2022 16:21:02 +0200
with message-id <87fsly4nfn.fsf@elephly.net>
and subject line Re: [bug#55144] [PATCH] gnu: Add r-affyrnadegradation.
has caused the debbugs.gnu.org bug report #55144,
regarding [PATCH] gnu: Add r-affyrnadegradation.
to be marked as done.

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-- 
55144: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=55144
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> --- Begin Message ---
>
>
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> Subject: 
>
> [PATCH] gnu: Add r-affyrnadegradation.
>
>
>
>
> Date: 
>
> Wed, 27 Apr 2022 12:56:14 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.
> ---
>  gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
>  1 file changed, 25 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 67ee6079c6..82aaf547a7 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -1664,6 +1664,31 @@ (define-public r-adamgui
>  the @code{GFAGpathUi} function.")
>      (license license:gpl2+)))
>  
> +(define-public r-affyrnadegradation
> +  (package
> +    (name "r-affyrnadegradation")
> +    (version "1.40.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "AffyRNADegradation" version))
> +              (sha256
> +               (base32
> +                "00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"))))
> +    (properties `((upstream-name . "AffyRNADegradation")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-affy))
> +    (home-page "https://bioconductor.org/packages/AffyRNADegradation";)
> +    (synopsis
> +     "Analyze and correct probe positional bias in data due to RNA 
> degradation")
> +    (description
> +     "The @code{AffyRNADegradation} package helps with the assessment and
> +correction of RNA degradation effects in Affymetrix 3' expression arrays.  The
> +parameter @code{d} gives a robust and accurate measure of RNA integrity.  The
> +correction removes the probe positional bias, and thus improves comparability
> +of samples that are affected by RNA degradation.")
> +    ;; the R file header specifies GPL2 or later
> +    (license license:gpl2+)))
> +
>  (define-public r-aneufinder
>    (package
>      (name "r-aneufinder")
>
> base-commit: 4fb6ef6636acd7608889639c1b2e492517256f76
> -- 
> 2.34.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
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> Subject: 
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> Re: [bug#55144] [PATCH] gnu: Add r-affyrnadegradation.
>
>
>
>
> Date: 
>
> Wed, 27 Apr 2022 16:21:02 +0200
>
>
>
>
> User-agent: 
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> mu4e 1.6.10; emacs 28.0.50
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-affyrnadegradation): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---