bug#34354: closed (Update python-biopython to 1.79, seqmagick to 0.8.4)

[GNU bug Tracking System]

Your message dated Tue, 12 Apr 2022 14:28:22 +0200
with message-id <87r162xz7o.fsf@elephly.net>
and subject line Re: bug#34354: Update python-biopython to 1.79, seqmagick to 
0.8.4
has caused the debbugs.gnu.org bug report #34354,
regarding Update python-biopython to 1.79, seqmagick to 0.8.4
to be marked as done.

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-- 
34354: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=34354
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: python-biopython: Update to 1.73.
>
>
>
>
> Date: 
>
> Wed, 06 Feb 2019 16:11:48 -0600
>
>
>
>
> >From c3243855b975db46cb8c31f7120c2a1ab4662aaa Mon Sep 17 00:00:00 2001
> From: Brett Gilio <brettg@posteo.net>
> Date: Wed, 6 Feb 2019 16:10:05 -0600
> Subject: [PATCH] gnu: python-biopython: Update to 1.73.
>
> * gnu/packages/bioinformatics.scm (python-biopython): Update to 1.73.
> ---
>  gnu/packages/bioinformatics.scm | 7 +++++--
>  1 file changed, 5 insertions(+), 2 deletions(-)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 516a7c1ee..99c205279 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -12,6 +12,7 @@
>  ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
>  ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
>  ;;; Copyright © 2018 Mădălin Ionel Patrașcu 
> <madalinionel.patrascu@mdc-berlin.de>
> +;;; Copyright © 2019 Brett Gilio <brettg@posteo.net>
>  ;;;
>  ;;; This file is part of GNU Guix.
>  ;;;
> @@ -838,14 +839,14 @@ provide a coordinated and extensible framework to do 
> computational biology.")
>  (define-public python-biopython
>    (package
>      (name "python-biopython")
> -    (version "1.70")
> +    (version "1.73")
>      (source (origin
>                (method url-fetch)
>                ;; use PyPi rather than biopython.org to ease updating
>                (uri (pypi-uri "biopython" version))
>                (sha256
>                 (base32
> -                "0nz4n9d2y2dg849gn1z0vjlkwcpzzkzy3fij7x94a6ixy2c54z2a"))))
> +                "1q55jhf76z3k6is3psis0ckbki7df26x7dikpcc3vhk1vhkwribh"))))
>      (build-system python-build-system)
>      (arguments
>       `(#:phases
> @@ -5879,6 +5880,8 @@ bioinformatics file formats, sequence alignment, and 
> more.")
>          (base32
>           "12bfyp8nqi0hd36rmj450aygafp01qy3hkbvlwn3bk39pyjjkgg5"))))
>      (build-system python-build-system)
> +    (arguments
> +     `(#:tests? #f)) ; Updating biopython to 1.73 results in failing tests
>      (inputs
>       `(("python-biopython" ,python-biopython)))
>      (native-inputs
> -- 
> 2.20.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: bug#34354: Update python-biopython to 1.79, seqmagick to 0.8.4
>
>
>
>
> Date: 
>
> Tue, 12 Apr 2022 14:28:22 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.10; emacs 28.0.50
>
>
>
>
> zimoun <zimon.toutoune@gmail.com> writes:
>
> > And the update of 1.79 requires more work.  Therefore, is it worth to
> > keep this submission open?  I guess the update to 1.79 will be done in
> > another number and few chance that the submitter will dig into to
> > tracker and send under this Debbugs number. :-)
> >
> > Closing?
>
> Yes.
>
> -- 
> Ricardo
>
>
> --- End Message ---