bug#54511: closed ([PATCH] gnu: Add r-cytobackbone.)

[GNU bug Tracking System]

Your message dated Tue, 29 Mar 2022 15:02:05 +0200
with message-id <87ee2k9aii.fsf@mdc-berlin.de>
and subject line [PATCH] gnu: Add r-cytobackbone.
has caused the debbugs.gnu.org bug report #54511,
regarding [PATCH] gnu: Add r-cytobackbone.
to be marked as done.

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-- 
54511: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=54511
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-cytobackbone.
>
>
>
>
> Date: 
>
> Mon, 21 Mar 2022 20:19:18 +0100
>
>
>
>
> * gnu/packages/bioconductor.scm (r-cytobackbone): New variable.
> ---
>  gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
>  1 file changed, 38 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 55d397e5cf..6f5a040f65 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -10066,6 +10066,44 @@ (define-public r-consensusclusterplus
>  cluster count and membership by stability evidence in unsupervised analysis.")
>      (license license:gpl2)))
>  
> +;; It doesn't have a system of releases. This package depends on a bioconductor
> +;; input.
> +(define-public r-cytobackbone
> +  (let ((commit "4c1a0a35cc5ae1f8f516127cec92351d96fe26e7") (revision "1"))
> +    (package
> +      (name "r-cytobackbone")
> +      (version (git-version "1.0.0" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/tchitchek-lab/CytoBackBone";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "0ahiad14zcgdk42xzw5xryic2ibn2l8lkrcdvl2b5sz2js028yb3"))))
> +      (properties `((upstream-name #{.}# "CytoBackBone")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-flowcore r-flowutils r-fnn r-ggplot2
> +                               r-preprocesscore))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/tchitchek-lab/CytoBackBone";)
> +      (synopsis
> +       "Merging of phenotype information from different cytometric profiles")
> +      (description
> +       "Single-cell technologies are the most suitable techniques for the
> +characterization of cells by the differential expression of the molecules that
> +define their roles and functions in tissues.  Among these techniques, mass
> +cytometry represents a leap forward by increasing the number of available
> +measurements to approximately 40 cell markers.  Thanks to this technology,
> +detailed immune responses were described in several diseases.  However, the
> +study of immune responses, such as that due to viral infections or auto-immune
> +diseases, could be further improved by increasing the number of simultaneously
> +measurable markers.  To increase this number, we designed an algorithm, named
> +@code{CytoBackBone}, which combines phenotypic information of different
> +cytometric profiles obtained from different cytometry panels.")
> +      (license license:gpl2))))
> +
>  (define-public r-cytolib
>    (package
>      (name "r-cytolib")
> -- 
> 2.34.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-cytobackbone.
>
>
>
>
> Date: 
>
> Tue, 29 Mar 2022 15:02:05 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.10; emacs 28.0.50
>
>
>
>
> I moved this to bioinformatics.scm.
>
> Thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---