bug#54510: closed ([PATCH] gnu: Add r-cycombine.)

[GNU bug Tracking System]

Your message dated Mon, 28 Mar 2022 17:08:33 +0200
with message-id <87v8vy865f.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-cycombine.
has caused the debbugs.gnu.org bug report #54510,
regarding [PATCH] gnu: Add r-cycombine.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
54510: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=54510
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-cycombine.
>
>
>
>
> Date: 
>
> Mon, 21 Mar 2022 19:02:42 +0100
>
>
>
>
> * gnu/packages/bioconductor.scm (r-cycombine): New variable.
> ---
>  gnu/packages/bioconductor.scm | 43 +++++++++++++++++++++++++++++++++++
>  1 file changed, 43 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 55d397e5cf..ffa38fda3a 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -10066,6 +10066,49 @@ (define-public r-consensusclusterplus
>  cluster count and membership by stability evidence in unsupervised analysis.")
>      (license license:gpl2)))
>  
> +;; This is the latest commit and it solves a bug from the latest release.
> +(define-public r-cycombine
> +  (let ((commit "f18504bc83ff5daee2b5eb4b28f09abdaaa66698") (revision "1"))
> +    (package
> +      (name "r-cycombine")
> +      (version (git-version "0.2.6" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/biosurf/cyCombine";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "1fiwnik8iahg01732fik85xhz359x32f1xc59h443pdf7jancskm"))))
> +      (properties `((upstream-name . "cyCombine")))
> +      (build-system r-build-system)
> +      (propagated-inputs
> +       (list r-biobase
> +             r-cytolib
> +             r-dplyr
> +             r-flowcore
> +             r-ggplot2
> +             r-knitr
> +             r-kohonen
> +             r-magrittr
> +             r-purrr
> +             r-rcolorbrewer
> +             r-readr
> +             r-readxl
> +             r-stringr
> +             r-sva
> +             r-tibble
> +             r-tidyr))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/biosurf/cyCombine";)
> +      (synopsis "Integration of single-cell cytometry datasets")
> +      (description
> +       "This package provides a method for combining single-cell cytometry
> +datasets, which increases the analytical flexibility and the statistical power
> +of the analyses while minimizing technical noise.")
> +      (license license:expat))))
> +
>  (define-public r-cytolib
>    (package
>      (name "r-cytolib")
> -- 
> 2.34.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-cycombine.
>
>
>
>
> Date: 
>
> Mon, 28 Mar 2022 17:08:33 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.10; emacs 28.0.50
>
>
>
>
> Thanks for the patch; I just applied it.
>
> -- 
> Ricardo
>
>
> --- End Message ---