bug#51319: closed ([PATCH 0/2] Better interoperability between guix and Julia built-in package manager)

[GNU bug Tracking System]

Your message dated Thu, 10 Mar 2022 00:59:35 +0100
with message-id <86pmmusmmw.fsf_-_@gmail.com>
and subject line Re: bug#51319: [PATCH 0/2] Better interoperability between 
guix and Julia built-in package manager
has caused the debbugs.gnu.org bug report #51319,
regarding [PATCH 0/2] Better interoperability between guix and Julia built-in 
package manager
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs@gnu.org.)


-- 
51319: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=51319
GNU Bug Tracking System
Contact help-debbugs@gnu.org with problems
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 0/2] Better interoperability between guix and Julia built-in package manager
>
>
>
>
> Date: 
>
> Thu, 21 Oct 2021 13:06:56 +0000
>
>
>
>
> With this patch, when a user install a package using Julia package manager,
> the package manager finds packages that were already installed in the guix
> profile and use them.
>
> First patch of the serie does the implementation, the second patch is an 
> example using
> sundials_jll package.
>
> Sundials_jll is a julia package that wraps the sundials library, it is 
> typically not
> installed on its own but as a dependency of DifferentialEquations.jl for 
> example.
>
> As DifferentialEquations.jl is not currently packaged in julia, a fallback is to
> install it with julia package manager. Unfortunately that will also install
> sundials_jll and downloads some .so that will fail to load on Guix because of
> linker incompatilibities.
>
> Now with the proposed patch, the user can install sundials_jll using guix,
> and then julia package manager will use this package instead of downloading some
> binary files.
>
> As for the patch itself, it works by following more closely the directory
> structure that Julia expects in JULIA_DEPOT_PATH. Namely the packages
> subfolder should not contain packages but packages/XXXX/ where XXXX is
> a string encoding package uuid and sha1 of package files.
>
> $JULIA_DEPOT_PATH/packages was also used as JULIA_LOAD_PATH, this will not
> work anymore as packages are behind a layer of XXXX sub directories.
> So instead I added a new subfolder $JULIA_DEPOT_PATH/loadpath where the package
> is installed and $JULIA_DEPOT_PATH/packages/XXXX is a symlink to it.
>
> Jean-Baptiste Volatier (2):
>   build-system/julia: Enable Julia Pkg to find installed packages
>   gnu: Add julia-sundials-jull
>
>  gnu/packages/julia-jll.scm        | 38 +++++++++++++++++++++++++
>  gnu/packages/julia-xyz.scm        |  2 +-
>  gnu/packages/julia.scm            |  2 +-
>  gnu/packages/maths.scm            | 24 ++++++++++++++++
>  guix/build/julia-build-system.scm | 46 ++++++++++++++++++++++++++++---
>  5 files changed, 106 insertions(+), 6 deletions(-)
>
> --
> 2.33.1
>
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: bug#51319: [PATCH 0/2] Better interoperability between guix and Julia built-in package manager
>
>
>
>
> Date: 
>
> Thu, 10 Mar 2022 00:59:35 +0100
>
>
>
>
> User-agent: 
>
> Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux)
>
>
>
>
> Hi Ludo,
>
> On Thu, 10 Mar 2022 at 00:33, Ludovic Courtès <ludo@gnu.org> wrote:
>
> >   https://issues.guix.gnu.org/51319
> >
> > Could you take a look and apply them if appropriate?
>
> >From my understanding, already applied with
> 3af351a7de41b8d50f27f3623c46392f571b9a4e and
> 546f8537aad3ac03fef43e036d3cab3abc943915.  Therefore, I am closing.
>
> Thanks for taking care.
>
> Cheers,
> simon
>
> PS: The feature pointed in the Guix-HPC report, IIRC. ;-)
>
>
> --- End Message ---