bug#47171: closed ([PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).)

[GNU bug Tracking System]

Your message dated Mon, 15 Mar 2021 23:33:11 +0100
with message-id <87pn00m4ig.fsf@elephly.net>
and subject line Re: [bug#47171] [PATCH 00/10] Move some Bioconductor packages 
to (gnu packages bioconductor).
has caused the debbugs.gnu.org bug report #47171,
regarding [PATCH 00/10] Move some Bioconductor packages to (gnu packages 
bioconductor).
to be marked as done.

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47171: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=47171
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Mon, 15 Mar 2021 19:07:14 +0100
>
>
>
>
> Hi,
>
> Janitor [1] patch set.  It moves Bioconductor packages from (gnu packages
> bioinformatics) to (gnu packages bioconductor).  Far to be complete; still 4
> pacth set like this one are coming...
>
> 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
>
>
> To transfer the Copyright, I use:
>
>    git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>
>
> Then, after the move, I run:
>
>    ./pre-inst-env guix build r-<name> --no-grafts
>    ./pre-inst-env guix build r-<name> --no-grafts --check
>
> and at the end of the series, I run:
>
>     make as-derivation
>
> to check that "guix pull" is not broken; just in case.
>
> Last, I have not carefully checked the imported modules, so it could
> be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
> in gnu/packages/bioinformatics.scm.
>
> All the best,
> simon
>
> zimoun (10):
>   gnu: r-limma: Move to (gnu packages bioconductor).
>   gnu: r-xvector: Move to (gnu packages bioconductor).
>   gnu: r-genomicranges: Move to (gnu packages bioconductor).
>   gnu: r-biobase: Move to (gnu packages bioconductor).
>   gnu: r-annotationdbi: Move to (gnu packages bioconductor).
>   gnu: r-biomart: Move to (gnu packages bioconductor).
>   gnu: r-biocparallel: Move to (gnu packages bioconductor).
>   gnu: r-biostrings: Move to (gnu packages bioconductor).
>   gnu: r-rsamtools: Move to (gnu packages bioconductor).
>   gnu: r-delayedarray: Move to (gnu packages bioconductor).
>
>  gnu/packages/bioconductor.scm   | 305 ++++++++++++++++++++++++++++++++
>  gnu/packages/bioinformatics.scm | 305 --------------------------------
>  2 files changed, 305 insertions(+), 305 deletions(-)
>
>
> base-commit: 266d55dc3080475544bf45e72359c9b9bbcecd53
> -- 
> 2.30.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#47171] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor).
>
>
>
>
> Date: 
>
> Mon, 15 Mar 2021 23:33:11 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.4.14; emacs 27.1
>
>
>
>
> Hi,
>
> > zimoun (10):
> >   gnu: r-limma: Move to (gnu packages bioconductor).
> >   gnu: r-xvector: Move to (gnu packages bioconductor).
> >   gnu: r-genomicranges: Move to (gnu packages bioconductor).
> >   gnu: r-biobase: Move to (gnu packages bioconductor).
> >   gnu: r-annotationdbi: Move to (gnu packages bioconductor).
> >   gnu: r-biomart: Move to (gnu packages bioconductor).
> >   gnu: r-biocparallel: Move to (gnu packages bioconductor).
> >   gnu: r-biostrings: Move to (gnu packages bioconductor).
> >   gnu: r-rsamtools: Move to (gnu packages bioconductor).
> >   gnu: r-delayedarray: Move to (gnu packages bioconductor).
>
> Thanks, I’ve pushed them all.
>
> -- 
> Ricardo
>
>
> --- End Message ---