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Re: Problem with sort ... textutils-2.0.21 on TRU64 v5.1a
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From: |
Bob Proulx |
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Subject: |
Re: Problem with sort ... textutils-2.0.21 on TRU64 v5.1a |
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Date: |
Fri, 30 Aug 2002 18:11:37 -0600 |
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User-agent: |
Mutt/1.4i |
Please send followups to the list.
----- Forwarded message from Parkin Frank - fparki <address@hidden> -----
From: Parkin Frank - fparki <address@hidden>
Date: Tue, 27 Aug 2002 12:02:38 +0100
To: "'address@hidden'" <address@hidden>
Subject: RE: Problem with sort ... textutils-2.0.21 on TRU64 v5.1a
Thanks for the response Bob.
----------------------------------------------
1. I have recreated the error with a 800mb file.
address@hidden:/sorttest >ls -l SORT_FILE_10m_recs.dat
-rw-rw-r-- 1 root system 846534740 Aug 27 11:53
SORT_FILE_10m_recs.dat
>cat SORT_FILE_10m_recs.dat | /usr/local/bin/sort -T /sorttest -t "|" +0 -1n
> todelete &
The process started to create files ...
address@hidden:/sorttest >ls -lt
total 961256
-rw------- 1 root system 4678491 Aug 27 11:55 sortacvpjC
-rw------- 1 root system 4722340 Aug 27 11:55 sortacvpjA
-rw------- 1 root system 4681291 Aug 27 11:55 sortacvpjB
-rw------- 1 root system 4722980 Aug 27 11:55 sortacvpjx
-rw------- 1 root system 4724584 Aug 27 11:55 sortacvpjy
-rw------- 1 root system 4696172 Aug 27 11:55 sortacvpjz
-rw------- 1 root system 4793950 Aug 27 11:55 sortacvpjs
-rw------- 1 root system 4736214 Aug 27 11:55 sortacvpjt
-rw------- 1 root system 4753926 Aug 27 11:55 sortacvpju
-rw------- 1 root system 4790359 Aug 27 11:55 sortacvpjv
-rw------- 1 root system 4748339 Aug 27 11:55 sortacvpjw
-rw------- 1 root system 4678491 Aug 27 11:55 sortacvpjn
-rw------- 1 root system 4677669 Aug 27 11:55 sortacvpjo
-rw------- 1 root system 4802880 Aug 27 11:55 sortacvpjp
-rw------- 1 root system 4800430 Aug 27 11:55 sortacvpjq
-rw------- 1 root system 4812746 Aug 27 11:55 sortacvpjr
-rw------- 1 root system 4739711 Aug 27 11:55 sortacvpjj
-rw------- 1 root system 4691903 Aug 27 11:55 sortacvpjk
-rw------- 1 root system 4722957 Aug 27 11:55 sortacvpjl
-rw------- 1 root system 4682820 Aug 27 11:55 sortacvpjm
-rw------- 1 root system 4746839 Aug 27 11:55 sortacvpje
-rw------- 1 root system 4751185 Aug 27 11:55 sortacvpjf
-rw------- 1 root system 4778778 Aug 27 11:55 sortacvpjg
-rw------- 1 root system 4773840 Aug 27 11:55 sortacvpjh
-rw------- 1 root system 4707655 Aug 27 11:55 sortacvpji
-rw------- 1 root system 4812064 Aug 27 11:55 sortacvpja
-rw------- 1 root system 4809098 Aug 27 11:55 sortacvpjb
-rw------- 1 root system 4795502 Aug 27 11:55 sortacvpjc
-rw------- 1 root system 4804368 Aug 27 11:55 sortacvpjd
Then died a few seconds later with ... /usr/local/bin/sort: cannot create
temporary file: /sorttest/sortacvpj: File exists.
2. Version of sort ...
/usr/local/bin/sort --version
sort (textutils) 2.0.21
3. Is GNU sort on Tru64 compiled as a 32-bit program or a 64-bit program?
Not sure. Used the default ./configure , make , make install. I have
included the configure output below.
4. Amount of RAM ... = 5gb.
Thanks
Frank
checking build system type... alphaev68-dec-osf5.1
checking host system type... alphaev68-dec-osf5.1
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checking for library containing opendir... none required
checking for struct stat.st_blocks... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for struct tm.tm_zone... yes
checking whether stat file-mode macros are broken... no
checking for nanoseconds member of struct stat.st_mtim... no
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checking whether time.h and sys/time.h may both be included... yes
checking for struct timespec... yes
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checking type of array argument to getgroups... gid_t
checking for mode_t... yes
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checking return type of signal handlers... void
checking for size_t... yes
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checking host operating system... Tru64
checking whether mkdir fails due to a trailing slash... no
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checking whether realloc is declared... yes
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checking whether strtoul is declared... yes
checking whether strtoull is declared... no
checking whether ttyname is declared... yes
checking for long file names... yes
checking for pathconf... yes
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checking for gethostbyname... yes
checking for gethostbyaddr... yes
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checking netinet/in.h usability... yes
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checking arpa/inet.h usability... yes
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checking for strerror_r... yes
checking whether strerror_r returns char *... no
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checking for iswcntrl... yes
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checking for alloca... yes
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checking whether stat file-mode macros are broken... (cached) no
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checking for getcwd... yes
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checking whether getcwd (NULL, 0) allocates memory for result... no
checking for function prototypes... yes
checking for limits.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dirent.h that defines DIR... (cached) yes
checking for library containing opendir... (cached) none required
checking for dirfd... no
checking whether dirfd is declared... no
checking for dirfd... (cached) no
checking how to get the file descriptor associated with an open DIR*...
dd_fd
checking for lchown... yes
checking for rmdir-not-empty errno value... 17
checking for working chown... yes
checking for sys/time.h... (cached) yes
checking for unistd.h... (cached) yes
checking for alarm... yes
checking for working mktime... yes
checking for localtime_r... yes
checking whether lstat dereferences a symlink specified with a trailing
slash... yes
checking whether lstat accepts an empty string... no
checking whether stat accepts an empty string... no
checking for working realloc... no
checking for working malloc... no
checking for library containing nanosleep... -lrt
checking whether nanosleep works... yes
checking for string.h... (cached) yes
checking for working readdir... yes
checking for working memcmp... yes
checking whether clearerr_unlocked is declared... no
checking whether feof_unlocked is declared... no
checking whether ferror_unlocked is declared... no
checking whether fflush_unlocked is declared... no
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checking whether fputs_unlocked is declared... no
checking whether fread_unlocked is declared... no
checking whether fwrite_unlocked is declared... no
checking whether getc_unlocked is declared... no
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checking whether putc_unlocked is declared... no
checking whether putchar_unlocked is declared... no
checking for group_member... no
checking for SVID conformant putenv... no
checking for AFS... no
checking for long long... yes
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checking whether strtol is declared... yes
checking whether strtoul is declared... (cached) yes
checking whether strtoull is declared... (cached) no
checking whether strtoimax is declared... no
checking whether strtoumax is declared... no
checking for limits.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for inttypes.h... (cached) yes
checking whether <inttypes.h> defines strtoumax as a macro... no
checking for strtoumax... no
checking for strtoul... yes
checking for strtoull... no
checking whether strtol is declared... (cached) yes
checking whether strtoul is declared... (cached) yes
checking whether strtoll is declared... no
checking whether strtoimax is declared... (cached) no
checking whether strtoumax is declared... (cached) no
checking for limits.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for inttypes.h... (cached) yes
checking whether <inttypes.h> defines strtoimax as a macro... no
checking for strtoimax... no
checking for strtol... yes
checking for strtoll... no
checking whether link(2) dereferences a symlink specified with a trailing
slash... yes
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checking for strftime... yes
checking for limits.h... (cached) yes
checking for bcopy... (cached) yes
checking for tzset... yes
checking for mempcpy... no
checking for memcpy... yes
checking for memset... yes
checking for struct tm.tm_zone... (cached) yes
checking for mblen... yes
checking for mbrlen... yes
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checking stdio_ext.h usability... no
checking stdio_ext.h presence... no
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checking for __fpending... no
checking whether __fpending is declared... no
checking how to determine the number of pending output bytes on a stream...
fp->_ptr - fp->_base
checking for getgroups... yes
checking for working getgroups... yes
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for fseeko... no
checking for vprintf... (cached) yes
checking for _doprnt... yes
checking for /proc/uptime... no
checking for ftruncate... yes
checking whether rename is broken... no
checking for mkstemp... yes
checking for mkstemp limitations... no
checking whether closedir returns void... no
checking whether utime accepts a null argument... yes
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checking for ld used by GCC... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... no
checking for shared library run path origin... /bin/ksh:
config/config.rpath: not found
done
checking for iconv... yes
checking how to link with libiconv... -liconv
checking whether system is Windows or MSDOS... no
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checking for strtoul... (cached) yes
checking for strpbrk... yes
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checking for memcmp... yes
checking for rmdir... yes
checking for rpmatch... yes
checking for strndup... no
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checking for strdup... yes
checking for memchr... yes
checking for memcpy... (cached) yes
checking for memmove... yes
checking for memrchr... no
checking for memset... (cached) yes
checking for getpagesize... (cached) yes
checking whether setvbuf arguments are reversed... no
checking for library containing clock_gettime... -lrt
checking for clock_gettime... yes
checking for gettimeofday... (cached) yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking whether gettimeofday clobbers localtime buffer... no
checking for acl... no
checking for bcopy... (cached) yes
checking for canonicalize_file_name... no
checking for endgrent... yes
checking for endpwent... yes
checking for fchdir... yes
checking for fdatasync... yes
checking for ftime... yes
checking for ftruncate... (cached) yes
checking for getcwd... (cached) yes
checking for gethrtime... no
checking for getmntinfo... yes
checking for hasmntopt... no
checking for isascii... (cached) yes
checking for iswspace... yes
checking for lchown... (cached) yes
checking for listmntent... no
checking for localeconv... yes
checking for memcpy... (cached) yes
checking for mempcpy... (cached) no
checking for mkfifo... yes
checking for realpath... yes
checking for resolvepath... no
checking for sethostname... yes
checking for strchr... yes
checking for strerror... (cached) yes
checking for strrchr... yes
checking for sysinfo... yes
checking for wcrtomb... yes
checking for tzset... (cached) yes
checking for getline... no
checking for getdelim... no
checking for obstacks... no
checking for working strtod... yes
checking for working strnlen... no
checking for nl_langinfo and CODESET... yes
checking whether we are using the GNU C Library 2.1 or newer... no
checking for iconv declaration...
extern size_t iconv (iconv_t cd, char * *inbuf, size_t
*inbytesleft, char * *outbuf, size_t *outbytesleft);
checking whether a running program can be unlinked... yes
checking for listmntent... (cached) no
checking for getmntinfo... (cached) yes
checking for mntent.h... (cached) no
checking for sys/param.h... (cached) yes
checking sys/ucred.h usability... no
checking sys/ucred.h presence... yes
configure: WARNING: sys/ucred.h: present but cannot be compiled.
configure: WARNING: sys/ucred.h: check for missing prerequisite headers?
configure: WARNING: sys/ucred.h: proceeding with the preprocessor's result
checking for sys/ucred.h... yes
checking for sys/mount.h... (cached) yes
checking for sys/fs_types.h... (cached) yes
checking for struct fsstat.f_fstypename... no
checking for getmntent in -lsun... no
checking for getmntent in -lseq... no
checking for getmntent in -lgen... no
checking for getmntent... no
checking for listmntent of Cray/Unicos-9... no
checking for getfsstat function... yes
checking for f_fstypename in struct statfs... no
checking how to get filesystem space usage...
checking for statvfs function (SVR4)... yes
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checking for floor... yes
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checking for rint... yes
checking for sqrt... no
checking for sqrt in -lm... yes
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checking for library containing yp_match... none required
checking for library containing getspnam... no
checking shadow.h usability... no
checking shadow.h presence... no
checking for shadow.h... no
checking for struct spwd.sp_pwdp... no
checking for getspnam... no
checking for library containing crypt... none required
checking for msgfmt... no
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checking for msgmerge... no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... (cached) yes
checking for working mmap... yes
checking argz.h usability... no
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checking for limits.h... (cached) yes
checking for locale.h... (cached) yes
checking nl_types.h usability... yes
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checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for stddef.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
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checking for setenv... yes
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checking for stpcpy... (cached) no
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extern size_t iconv (iconv_t cd, char * *inbuf, size_t
*inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for bison... no
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checking whether included gettext is requested... no
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configure: creating ./config.status
config.status: creating Makefile
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config.status: creating config.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
5.
-----Original Message-----
From: address@hidden [mailto:address@hidden
Sent: 25 August 2002 07:37
To: Parkin Frank - fparki
Cc: address@hidden
Subject: Re: Problem with sort ... textutils-2.0.21 on TRU64 v5.1a
Parkin Frank - fparki <address@hidden> [2002-08-23 16:27:22 +0100]:
> When sorting large files I (root) receive the following message ...
When you say "large files" do you mean files greater than 2GB?
Today's jargon calls files which exceed 2^31 bits large files and they
take special handling in 32 bit programs. Of course 64 bit programs
should handle those fine up to 2^63 bits.
And does that also imply that you don't get that error message when
sorting small files? It works up to a larger file size?
> /usr/local/bin/sort: cannot create temporary file: /sorttest/sortapuED:
File exists
Hmm... Normally sort will call mkstemp() with a default temporary
directory set it /tmp/sortXXXXXX. I assume you are overriding the
temporary directory and placing it in /sorttest/?
> I have tried various command combinations with different temporary areas
> (all 777 perm).
>
> Compaq sort and syncsort are working correctly on the same system.
>
> Can you help?
There are several possible problems. We need to determine several
things to move forward.
1. The exact version of sort you are using. 'sort --version'
2. Is GNU sort on True64 compiled as a 32-bit program or a 64-bit
program?
3. The size of the file you are trying to sort. 'ls -l'
4. The size and number of the temporary files being generated. Can
you run 'ls -l' on the temporary directory while this is running
and catch the size of the files there in process? Also, are there
a lot of them or just one or just none? This is tricky to do since
when sort exits it will clean everything up and remove those
files. You have to catch it in motion.
5. The amount of physical ram on your system in round numbers.
The temporary file size is related to the amount of memory that the
sort program thinks is available. On some systems it can't tell and
has to guess. If it has to guess then it guesses very conservatively
in terms of memory but that means that it uses more disk space and
therefore has a longer run time. The guess size IIRC is 8MB and when
sorting a big files can create a lot of temporaries. Instead of not
being able to create a temporary file you might be actually running
out of temporary files. Just a guess and more information will be
needed to tell for sure.
Bob
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