Process is killed inside GNU Parallel on High Performance Computing system

[Truong, Minh Thanh Buu - trumt001]

Dear GNU parallel,

 

I have a problem with GNU parallel on the HPC, my code is:

                parallel --progress --joblog ${home}/data/hsc-admmt/Projects/log_a.sh -j 5 :::: a.sh

 

It automatically stops the code inside the bash script and resulted in this error:

/scratch/eu82/bt0689/data/hsc-admmt/Projects/sim_causal_mantel_generate.sh: line 54: 3050285 Killed                  $home/data/hsc-admmt/Tools/mtg2 -plink plink_all${nsamp}${nsnp}_1 -simreal snp.lst1

 

I wonder what problem is this and how to solve it? However, I can run normally the code without parallel

The single line of code usually takes around 30 min to finish.

Your help is really appreciated!

 

Thank you very much,

Best,

Buu