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bug#38249: 12.2.0; reftex-create-bibtex-file and biblatex


From: Gustavo Barros
Subject: bug#38249: 12.2.0; reftex-create-bibtex-file and biblatex
Date: Sun, 17 Nov 2019 16:57:37 -0300
User-agent: mu4e 1.2.0; emacs 26.3

Hi all,

`reftex-create-bibtex-file' is a neat RefTeX utility, but it doesn’t seem to handle some peculiarities of `biblatex', namely:

- `reftex-all-used-citation-keys', the auxiliary function used by `reftex-create-bibtex-file' to generate the list of entries cited in the document, does not include entries cited in qualified citation lists.

- `reftex-create-bibtex-file' handles the traditional BibTeX `crossref' and `string' fields, but biblatex extends data inheritance and entry cross-reference with such fields as `xref', `xdata' and `set', which are not taken care of.

A MWE which illustrates these cases is:

#+begin_export latex
\documentclass{article}

\usepackage[minxrefs=1]{biblatex}

\usepackage{filecontents}
\begin{filecontents}{mwe_bib.bib}
@article{sigfridsson,
 author       = {Sigfridsson, Emma and Ryde, Ulf},
title = {Comparison of methods for deriving atomic charges from the electrostatic potential and moments},
 journaltitle = {Journal of Computational Chemistry},
 date         = 1998,
 volume       = 19,
 number       = 4,
 pages        = {377-395},
doi = {10.1002/(SICI)1096-987X(199803)19:4<377::AID-JCC1>3.0.CO;2-P},
}

@article{reese,
 author       = {Reese, Trevor R.},
 title        = {Georgia in {Anglo-Spanish} Diplomacy, 1736--1739},
 journaltitle = {William and Mary Quarterly},
 date         = 1958,
 series       = 3,
 volume       = 15,
 pages        = {168-190},
}

@book{companion,
author = {Goossens, Michel and Mittelbach, Frank and Samarin, Alexander},
 title        = {The {LaTeX} Companion},
 date         = 1994,
 edition      = 1,
 publisher    = {Addison-Wesley},
 location     = {Reading, Mass.},
 pagetotal    = 528,
}

@incollection{westfahl:space,
 author       = {Westfahl, Gary},
 title        = {The True Frontier},
subtitle = {Confronting and Avoiding the Realities of Space in {American} Science Fiction Films},
 pages        = {55-65},
 xref         = {westfahl:frontier},
}

@collection{westfahl:frontier,
 editor       = {Westfahl, Gary},
 title        = {Space and Beyond},
 date         = 2000,
 subtitle     = {The Frontier Theme in Science Fiction},
 publisher    = {Greenwood},
 location     = {Westport, Conn. and London},
}

@xdata{hup,
 publisher    = {Harvard University Press},
 location     = {Cambridge, Mass.},
}

@incollection{pines,
 author       = {Pines, Shlomo},
 editor       = {Twersky, Isadore},
title = {The Limitations of Human Knowledge According to {Al-Farabi}, {ibn Bajja}, and {Maimonides}},
 date         = 1979,
 booktitle    = {Studies in Medieval {Jewish} History and Literature},
 xdata        = {hup},
 pages        = {82-109},
 shorttitle   = {Limitations of Human Knowledge},
}

@set{stdmodel,
 entryset     = {glashow,weinberg,salam},
annotation = {A \texttt{set} with three members discussing the standard model of particle physics.},
}

@article{glashow,
 author       = {Glashow, Sheldon},
 title        = {Partial Symmetries of Weak Interactions},
 journaltitle = {Nucl.~Phys.},
 date         = 1961,
 volume       = 22,
 pages        = {579-588},
}

@article{weinberg,
 author       = {Weinberg, Steven},
 title        = {A Model of Leptons},
 journaltitle = {Phys.~Rev.~Lett.},
 date         = 1967,
 volume       = 19,
 pages        = {1264-1266},
}

@inproceedings{salam,
 author       = {Salam, Abdus},
 editor       = {Svartholm, Nils},
 title        = {Weak and Electromagnetic Interactions},
 date         = 1968,
 booktitle    = {Elementary particle theory},
 booksubtitle = {Relativistic groups and analyticity},
 booktitleaddon= {Proceedings of the {Eighth Nobel Symposium}},
 eventdate    = {1968-05-19/1968-05-25},
 venue        = {Aspen{\"a}sgarden, Lerum},
 publisher    = {Almquist \& Wiksell},
 location     = {Stockholm},
 pages        = {367-377},
}
\end{filecontents}

\addbibresource{mwe_bib.bib}

\begin{document}

% Entries cited in qualified citation lists are missing in the file generated by `reftex-create-bibtex-file'.
\cites(See, for example)()[45]{sigfridsson}[67]{reese}[24]{companion}.
\textcites(See, for example)()[45]{sigfridsson}[67]{reese}[24]{companion}. \parencites(See, for example)()[45]{sigfridsson}[67]{reese}[24]{companion}.

% Entry `westfahl:space' xref's entry `westfahl:frontier'. The latter should be included in the bibliography, given option `minxrefs=1', but it is missing in the file generated by `reftex-create-bibtex-file'.
\cite{westfahl:space}.

% Entry `pines' uses xdata from entry `hup', but the latter is missing in the file generated by `reftex-create-bibtex-file'.
\cite{pines}.

% Set `stdmodel' is composed by entries `glashow', `weinberg' and `salam', wich are missing in the file generated by `reftex-create-bibtex-file'.
\cite{stdmodel}.

\printbibliography{}

\end{document}
#+end_export

The content of the file generated by `reftex-create-bibtex-file' on the above MWE is:

#+begin_example
@incollection{westfahl:space,
 author       = {Westfahl, Gary},
 title        = {The True Frontier},
subtitle = {Confronting and Avoiding the Realities of Space in {American} Science Fiction Films},
 pages        = {55-65},
 xref         = {westfahl:frontier},
}

@incollection{pines,
 author       = {Pines, Shlomo},
 editor       = {Twersky, Isadore},
title = {The Limitations of Human Knowledge According to {Al-Farabi}, {ibn Bajja}, and {Maimonides}},
 date         = 1979,
 booktitle    = {Studies in Medieval {Jewish} History and Literature},
 xdata        = {hup},
 pages        = {82-109},
 shorttitle   = {Limitations of Human Knowledge},
}

@set{stdmodel,
 entryset     = {glashow,weinberg,salam},
annotation = {A \texttt{set} with three members discussing the standard model of particle physics.},
}
#+end_example

However, all the entries initially provided are required for the MWE to work correctly.

Best regards,
Gustavo Barros.



Emacs : GNU Emacs 26.3 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.22.30)
of 2019-11-11
Package: 12.2.0

current state:
==============
(setq
AUCTeX-date "2019-10-31"
window-system 'x
LaTeX-version "2e"
TeX-style-path '("/home/gustavo/.emacs.d/auctex"
                 "/home/gustavo/.emacs.d/elpa/auctex-12.2.0/style"
                 "/home/gustavo/.emacs.d/AUCTeX/auto"
                 "/home/gustavo/.emacs.d/AUCTeX/style" ".auctex-auto"
                 "auctex-style")
TeX-auto-save t
TeX-parse-self t
TeX-master t
TeX-command-list '(("TeX"
"%(PDF)%(tex) %(file-line-error) %`%(extraopts) %S%(PDFout)%(mode)%' %t" TeX-run-TeX nil (plain-tex-mode ams-tex-mode texinfo-mode)
                    :help "Run plain TeX")
                   ("LaTeX" "%`%l%(mode)%' %T" TeX-run-TeX nil
                    (latex-mode doctex-mode) :help "Run LaTeX")
("Makeinfo" "makeinfo %(extraopts) %t" TeX-run-compile nil (texinfo-mode) :help "Run Makeinfo with Info output")
                   ("Makeinfo HTML" "makeinfo %(extraopts) --html %t"
                    TeX-run-compile nil (texinfo-mode) :help
                    "Run Makeinfo with HTML output")
("AmSTeX" "amstex %(PDFout) %`%(extraopts) %S%(mode)%' %t"
                    TeX-run-TeX nil (ams-tex-mode) :help "Run AMSTeX")
                   ("ConTeXt"
"%(cntxcom) --once --texutil %(extraopts) %(execopts)%t" TeX-run-TeX nil (context-mode) :help "Run ConTeXt once") ("ConTeXt Full" "%(cntxcom) %(extraopts) %(execopts)%t"
                    TeX-run-TeX nil (context-mode) :help
                    "Run ConTeXt until completion")
                   ("BibTeX" "bibtex %s" TeX-run-BibTeX nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode context-mode)
                    :help "Run BibTeX")
                   ("Biber" "biber %s" TeX-run-Biber nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Run Biber")
("View" "%V" TeX-run-discard-or-function t t :help "Run Viewer") ("Print" "%p" TeX-run-command t t :help "Print the file")
                   ("Queue" "%q" TeX-run-background nil t :help
"View the printer queue" :visible TeX-queue-command)
                   ("File" "%(o?)dvips %d -o %f " TeX-run-dvips t
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Generate PostScript file")
                   ("Dvips" "%(o?)dvips %d -o %f " TeX-run-dvips nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Convert DVI file to PostScript")
                   ("Dvipdfmx" "dvipdfmx %d" TeX-run-dvipdfmx nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Convert DVI file to PDF with dvipdfmx")
                   ("Ps2pdf" "ps2pdf %f" TeX-run-ps2pdf nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Convert PostScript file to PDF")
("Glossaries" "makeglossaries %s" TeX-run-command nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
:help "Run makeglossaries to create glossary\n file")
                   ("Index" "makeindex %s" TeX-run-index nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Run makeindex to create index file")
                   ("upMendex" "upmendex %s" TeX-run-index t
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Run upmendex to create index file")
                   ("Xindy" "texindy %s" TeX-run-command nil
                    (plain-tex-mode latex-mode doctex-mode ams-tex-mode
                     texinfo-mode)
                    :help "Run xindy to create index file")
("Check" "lacheck %s" TeX-run-compile nil (latex-mode) :help
                    "Check LaTeX file for correctness")
("ChkTeX" "chktex -v6 %s" TeX-run-compile nil (latex-mode) :help
                    "Check LaTeX file for common mistakes")
("Spell" "(TeX-ispell-document \"\")" TeX-run-function nil t
                    :help "Spell-check the document")
                   ("Clean" "TeX-clean" TeX-run-function nil t :help
                    "Delete generated intermediate files")
("Clean All" "(TeX-clean t)" TeX-run-function nil t :help
                    "Delete generated intermediate and output files")
("Other" "" TeX-run-command t t :help "Run an arbitrary command") ("make4odt" "make4ht -f odt %t" TeX-run-TeX nil (latex-mode)) ("make4html" "make4ht -uf html5+tidy %t" TeX-run-TeX nil
                    (latex-mode))
("Arara" "arara --verbose %s" TeX-run-TeX nil t :help
                    "Run Arara.")
                   )
)





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