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From: | George Foody (Researcher) |
Subject: | Re: [Bammds-users] Issue using bammds |
Date: | Wed, 12 Apr 2017 18:55:45 +0000 |
I have also tried the suggestion posted on https://lists.nongnu.org/archive/html/bammds-users/2016-12/msg00001.html which removed skip. However as soon as I do this (or remove part of skip) I get the following error (I have been trying this on the Gus data)
Error in setcolorder(ans, reorder) :
neworder is length 0 but x has 1878 columns.
Calls: all ... read_data_files -> as.data.frame -> <Anonymous> -> setcolorder
Execution halted
Any help would be much appreciated
George Foody Archaeogenetics Research Group
Department of Biological Sciences School of Applied Sciences | University of Huddersfield | Queensgate | Huddersfield | HD1 3DH From: George Foody (Researcher)
Sent: 11 April 2017 14:52:20 To: address@hidden Subject: Issue using bammds Dear sir/madam
I keep getting the following error when using bammds, using the Gus test data: I have tried reinstalling several times
[mpileup] 1 samples in 2 input files
<mpileup> Set max per-file depth to 8000
Error in data.table::fread(asd_file, sep = "auto", sep2 = "auto", nrows = nrows, :
'skip' must be a length 1 vector of type numeric or integer >=0, or single character search string
Calls: all -> read_data_files -> as.data.frame -> <Anonymous>
Execution halted
Regards
George Foody Archaeogenetics Research Group
Department of Biological Sciences School of Applied Sciences | University of Huddersfield | Queensgate | Huddersfield | HD1 3DH |
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